View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_low_5 (Length: 467)
Name: NF19281_low_5
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 25295887 - 25295602
Alignment:
| Q |
18 |
tttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcacgttgttattcttgagatttctgtatgatttaat |
117 |
Q |
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| T |
25295887 |
tttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcaagttgttattcttgagatttctgtatgatttaat |
25295788 |
T |
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| Q |
118 |
gagcaatgattaaaa---tgttcactcatatgattaggat----tatgattaatgcttcttttcacc--nnnnnnnntattgattcttcctcttttggca |
208 |
Q |
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| T |
25295787 |
tagcaatgattaaaatattgttcactcatatgattaggattatatatgattaatgcttcttttcaccaaaaaaaaaatattgattcttcctcttttggca |
25295688 |
T |
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| Q |
209 |
ctgtagagggtacgagtccacaatataagattattaatttgagttaaacctggttgattgatataatggggtgaaattcttttagtacctc |
299 |
Q |
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| T |
25295687 |
ctgtagagggt----gtccacaatat-agattattaatttgagttaaacctggtggattgatataatggggtgaaattcttttagtacctc |
25295602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 25295578 - 25295460
Alignment:
| Q |
350 |
aaatcgtataatatatgtggtttcata-gattattaaggtttcattgaaccttattttttcccttccataattgttgtgatgatgtgagtttttggaatg |
448 |
Q |
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| T |
25295578 |
aaatcgtataatatatgtggtttcataagattattaaggtttcattgaacctaattttttcccttccataattgttctgatgatgtgagtttttggaatg |
25295479 |
T |
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| Q |
449 |
tcaacgtgtcactgcacca |
467 |
Q |
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| T |
25295478 |
tcaacgtgtcactgcacca |
25295460 |
T |
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