View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19281_low_7 (Length: 434)

Name: NF19281_low_7
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19281_low_7
NF19281_low_7
[»] scaffold1861 (1 HSPs)
scaffold1861 (3-287)||(566-850)
[»] chr5 (5 HSPs)
chr5 (313-414)||(5857583-5857684)
chr5 (323-391)||(5856696-5856764)
chr5 (276-320)||(5856587-5856631)
chr5 (313-360)||(5856653-5856700)
chr5 (276-320)||(5857706-5857750)
[»] scaffold0415 (1 HSPs)
scaffold0415 (309-391)||(12607-12688)
[»] chr4 (1 HSPs)
chr4 (309-391)||(29846781-29846862)
[»] chr1 (1 HSPs)
chr1 (277-328)||(24989414-24989465)


Alignment Details
Target: scaffold1861 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold1861
Description:

Target: scaffold1861; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 566 - 850
Alignment:
Q  3 ctgtcattggagctagaagcaatgaggatttg-gacatgcattaccataatgtttgaatctttaacgcttccggctccaatgatggttacgttcacggat 101  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |    
T  566 ctgtcattggaactagaagcaatgaggattttagacatgcattaccataatgtttgaatccttaacgcttccagctccaatgatggttacattcacggtt 665  T
Q  102 gctcccaaatctccgactacaatgacggtaaccgctcctccaaccttgcaggttgttcatattgtctctggctctagcgacggttatagagacttcatcc 201  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| | |||||||||||    
T  666 gctcccaaatctccaagtacaatgacggtaaccgctcctccaaccttgcgggttgttcgtattgtctctggctctagtgacggttaca-agacttcatcc 764  T
Q  202 gttgcacaaaaaaggtatgcatttgcatttaaatttgtttttatatcatcgttttttcctcatattaattagatttaaatgcaatt 287  Q
    ||||  || ||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  765 gttgtgcagaaaagatatggatttgcatttaaatttgtttttatatcaccgtttttttctcatattaattaggcttaaatgcaatt 850  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 414
Target Start/End: Complemental strand, 5857684 - 5857583
Alignment:
Q  313 gcaattttaatcccccaaatttactccctttttgattttaaagtccccagacccatatgtggttggatttatttgaagtctacactagtaacataaacct 412  Q
    ||||||||  ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||   || ||||||||||||    
T  5857684 gcaatttttgtcccccacatttaccccctttttgattttaaagtccccacacccatatgtggttggatttgtttgaagtctatgatactaacataaacct 5857585  T
Q  413 tt 414  Q
    ||    
T  5857584 tt 5857583  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 5856696 - 5856764
Alignment:
Q  323 tcccccaaatttactccctttttgattttaaagtccccagacccatatgtggttggatttatttgaagt 391  Q
    ||||||| |||||| |||||||||||||||||||||| | |||||| ||||||||||||| ||||||||    
T  5856696 tcccccacatttaccccctttttgattttaaagtcccaatacccatgtgtggttggatttttttgaagt 5856764  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 5856587 - 5856631
Alignment:
Q  276 ttaaatgcaattttagtcccccaaattttcaaattgtgcaatttt 320  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  5856587 ttaaatgcaattttagtcccccaagttttctaattgtgcaatttt 5856631  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 5856653 - 5856700
Alignment:
Q  313 gcaattttaatcccccaaatttactccctttttgattttaaagtcccc 360  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  5856653 gcaattttagtcccccacatttaccccctttttgattttaaagtcccc 5856700  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 5857750 - 5857706
Alignment:
Q  276 ttaaatgcaattttagtcccccaaattttcaaattgtgcaatttt 320  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  5857750 ttaaatgcaattttagtcccccaagttttctaattgagcaatttt 5857706  T

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Target: scaffold0415 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 391
Target Start/End: Complemental strand, 12688 - 12607
Alignment:
Q  309 ttgtgcaattttaatcccccaaatttactccctttttgattttaaagtccccagacccatatgtggttggatttatttgaagt 391  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||||||  || ||||||||||||||| ||||||||||    
T  12688 ttgtgcaattttagtcccc-aagtttactccattttttattttaaagtccccttactcatatgtggttggatctatttgaagt 12607  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 29846781 - 29846862
Alignment:
Q  309 ttgtgcaattttaatcccccaaatttactccctttttgattttaaagtccccagacccatatgtggttggatttatttgaagt 391  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||||||  || ||||||||||||||| ||||||||||    
T  29846781 ttgtgcaattttagtcccc-aagtttactccattttttattttaaagtccccttactcatatgtggttggatctatttgaagt 29846862  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 24989465 - 24989414
Alignment:
Q  277 taaatgcaattttagtcccccaaattttcaaattgtgcaattttaatccccc 328  Q
    ||||||||||||||||||   || |||||||||||||||||||| |||||||    
T  24989465 taaatgcaattttagtcctgtaagttttcaaattgtgcaattttgatccccc 24989414  T

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