View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19282_high_2 (Length: 500)
Name: NF19282_high_2
Description: NF19282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19282_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 484
Target Start/End: Original strand, 45307709 - 45308183
Alignment:
| Q |
10 |
attattcttgaatactcatcaaactcttttgttttttatgtctgaaatgtacattggtcttcagattcgtgagctccaccgtgtttatcataaacagagg |
109 |
Q |
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| T |
45307709 |
attattcttgaatactcatcaaactcttttgttttttatgtctgaaatgtacattggtcttcagattcgtgagctccaccgtgtttatcataaacagagg |
45307808 |
T |
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| Q |
110 |
gaattaatggatgaatttaaaaggagtgaattacataaacaaaatgtaaggttggagccatcatggtctagttccgctttgttgtcgaaaaacgcagaaa |
209 |
Q |
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| T |
45307809 |
gaattaatggatgaatttaaaaggagtgaattacataaacaaaatgtaaggttggagccatcatggtctagttctgctttgttgtcgaaaaacgcagaaa |
45307908 |
T |
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| Q |
210 |
agacattttactcaccaaaccggccctggtcaacctctcaatcatctgttttatttgccgaaagcatccagttgccactggcgtttgcccaagaaaaaag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45307909 |
agacattttactcaccaaaccggccctggtcaacctctcaatcatctgttttatttgccgaaagcatccagttgccactggcatttgcccaagaaaaaag |
45308008 |
T |
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| Q |
310 |
caagcaaatttttcctgctcatgcttcaactgtaaccgaagaacctttaaaagattataaactaccagagtccatgtgcagaaaagtcggtaaaaaagta |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45308009 |
caagcaaatttttcctgctcatgcttcaactgtaaccgaagaacctttaaaagattataaactactagagtccatgtgcagaaaagtcggtaaaaaagta |
45308108 |
T |
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| Q |
410 |
ttggatcttgaacttcctgctgatgagtacattgatagtgatgaaggtgaagaaaatgtaagggttactgaagtg |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45308109 |
ttggatcttgaacttcctgctgatgagtacattgatagtgatgaaggtgaagaaaatgtaagggttactgaagtg |
45308183 |
T |
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