View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19282_high_4 (Length: 486)
Name: NF19282_high_4
Description: NF19282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19282_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 35706264 - 35706734
Alignment:
| Q |
1 |
tccaccatgattatttgtaggcgtatcctttaaattattcgaaaccatccaatccagttagtggattatgcatgtccatattcttctggcaaataaaact |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35706264 |
tccaccaagattatttgtaggcgtatcctttaaattattcgaaaccatccaatccagttggtggattatgcatgtctatattcttctggcaaataaaact |
35706363 |
T |
|
| Q |
101 |
tcgctccactcgatcaaatccatattattttctttcttacacggttccccgcctattgaacaacgtatgtgctatcatattcttgtcccactgcccacat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706364 |
ttgctccactcgatcaaatccatattattttcttccttacacggttccccgcctattgaacaacgtatgtgctatcatattcttgtcccactgcccacat |
35706463 |
T |
|
| Q |
201 |
ctaaatgaagggttcttattggttttggcttttgaaatcgcaaatggatgcatgaaattggacttgtggtcctttggcggatgactagtgcttttcattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706464 |
ctaaatgaagggttcttattggttttggcttttgaaatcgcaaatggatgcatgaaattggacttgtggtcctttggcggatgactagtgcttttcattt |
35706563 |
T |
|
| Q |
301 |
gacaacaaaagattgaatctgaaggtcagaaatggtaagccaattttcatgacttggtgtccctgttttctagatatagacccacatatttgaaagattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706564 |
gacaacaaaagattgaatctgaaggtcagaaatggtaagccaattttcatgacttggtgtccctgttttctagatatagacccacatatttgaaagattt |
35706663 |
T |
|
| Q |
401 |
tccccaccatgtatcgtaagtatcaaatggaagattctgctacagcgattgtgatgcttgtgtgggcacac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35706664 |
tccccaccatgtatcgtaagtatcaaatggaagattctgctacagcgattgtgatgcttgtgtgggcacac |
35706734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University