View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19282_low_3 (Length: 488)
Name: NF19282_low_3
Description: NF19282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19282_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 44780139 - 44780599
Alignment:
| Q |
16 |
atttagaagacattaaatatgacttttttaggataatggttgaattccacgcaaatgatcggatgatgaaagggaaatttgtttatttgtagtgttgatt |
115 |
Q |
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| T |
44780139 |
atttagaagacattaaatatgacatttttaggataatggttgaattccacgcaaatgatcggatgatgaaagggaaatttgtttatttgtagtgttgatt |
44780238 |
T |
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| Q |
116 |
tcaaaaaagattatttgttttgttaaaatatcagagtttaggctgatgtctttgatagggtatttatacaaagtcttgttaaaagttttggtcgatatat |
215 |
Q |
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| T |
44780239 |
tcaaaaaagattatttgttttgttaaaatatcagattttaggctgatatctttgatagggtatttatacaaagtcttgttaaaagttttggtcgatatat |
44780338 |
T |
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| Q |
216 |
tgaaaaaagtaattggttatgttatttcaagtgatataatgacataagcttctaagagcatt-----gtaagtaataaattaaaaatggtccttagttgt |
310 |
Q |
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| T |
44780339 |
tgaaaaaagtaattggttatgttatttcaagggatataatgacataagcttctaagaacattcacaatggagtaataaattaaaaatggtccttagttgt |
44780438 |
T |
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| Q |
311 |
aattgac-gaaaaacaatgaaatcgaaatatgcatagtatattatgttctgtttttgttcatgtcttaaaattccgtttgagttatattaaaaatcgatt |
409 |
Q |
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| T |
44780439 |
aattgacggaaaaacaatgaaatcgaaatatgcacactatattatgttctgcttttgttcatgtcttaaaaatccgtttgagttatattaaaaattgatt |
44780538 |
T |
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| Q |
410 |
tatggatctgtaagtttagttcagttgacatgaacaatacatatgaatttgaactcggaca |
470 |
Q |
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| T |
44780539 |
tatggatctataagtttagttcagttgacatgaataatacatatgaatttaaactcggaca |
44780599 |
T |
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