View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19282_low_5 (Length: 437)

Name: NF19282_low_5
Description: NF19282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19282_low_5
NF19282_low_5
[»] chr5 (9 HSPs)
chr5 (248-419)||(39858107-39858278)
chr5 (11-210)||(39857906-39858110)
chr5 (255-416)||(39848360-39848521)
chr5 (238-332)||(38971851-38971945)
chr5 (238-415)||(39911999-39912177)
chr5 (243-400)||(39898972-39899128)
chr5 (159-223)||(39848261-39848325)
chr5 (236-400)||(37466852-37467010)
chr5 (13-53)||(39848084-39848124)
[»] chr1 (1 HSPs)
chr1 (115-155)||(9939563-9939603)
[»] scaffold0057 (1 HSPs)
scaffold0057 (118-155)||(43734-43771)
[»] chr4 (1 HSPs)
chr4 (96-140)||(54175156-54175200)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 248 - 419
Target Start/End: Original strand, 39858107 - 39858278
Alignment:
Q  248 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858107 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 39858206  T
Q  348 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttcc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858207 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttcc 39858278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 39857906 - 39858110
Alignment:
Q  11 cacagacatgaatcacaaaaaattaagcaccctcacaagcattaagggnnnnnnn-ctatgggatccaaaaacaatcaacatagagaaagggcagcccgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||    
T  39857906 cacagacatgaatcacaaaaaattaagcaccctcacaagcattaagggaaaaaaaactatgggatccaaaaacaatcaatatagagaaagggcagcccgg 39858005  T
Q  110 tttgataaagctcccgcatatgcag----ggtccgagaggggggtcccacaattaagtatcaacttgatatagatgtcatgagcagattcaacattaaac 205  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39858006 tttgataaagctcccgcatatgcaggcagggtccgagaggggggtcccacaattaagtatcagcttgatatagatgtcatgagcagattcaacattaaac 39858105  T
Q  206 ataaa 210  Q
    |||||    
T  39858106 ataaa 39858110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 255 - 416
Target Start/End: Original strand, 39848360 - 39848521
Alignment:
Q  255 caacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacaga 354  Q
    |||||| ||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||||||||||||  |||||||||| |  |||| |||||||    
T  39848360 caacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacaga 39848459  T
Q  355 ttttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttt 416  Q
    || |||||| ||||||| ||||||| ||||| |||||||| |||||  |||| |||||||||    
T  39848460 ttgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgctttt 39848521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 38971945 - 38971851
Alignment:
Q  238 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca 332  Q
    |||| ||||||||||||||||||||||| |  |||||||||||||||| |||| ||||||||| |||||||||||||  |||||||||| |||||    
T  38971945 aacacttgcctaaaacccaacaaccagaaacaaaaaagtcataaaataagaagtttgaagggggtatatgagcaaaatcatattgaaaagcttca 38971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 415
Target Start/End: Original strand, 39911999 - 39912177
Alignment:
Q  238 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaa--cttca-ag 334  Q
    ||||||| ||||||| | ||||| |||| ||||||| |||| | |||| |||||||||||||| ||||||||||||| |||||| |||||  ||||| ||    
T  39911999 aacattttcctaaaagcaaacaatcagaaatgaaaaggtcacagaataagaagcttgaagggggtatatgagcaaaataatattcaaaaaagcttcatag 39912098  T
Q  335 caatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgcttt 415  Q
      ||||||| || |||||| |  ||||||||| ||||||||||| |||||| |||| |||||||||  ||||| |||||||    
T  39912099 --atctcataaatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgcttt 39912177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 400
Target Start/End: Original strand, 39898972 - 39899128
Alignment:
Q  243 ttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca-agcaatctc 341  Q
    |||||||||| |||| ||||| | | ||||||||||||||||| |||||||||||||  ||| ||||||||  ||||||||||  ||||| ||  ||||     
T  39898972 ttgcctaaaagccaaaaaccaaaaacgaaaaagtcataaaataagaagcttgaagggagtatgtgagcaaataaatattgaaaggcttcatag--atctg 39899069  T
Q  342 atgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgta 400  Q
    ||||| |||||| |  ||||||||| |||| ||||||||||||| | |||||| |||||    
T  39899070 atgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgta 39899128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 39848261 - 39848325
Alignment:
Q  159 taagtatcaacttgatatagatgtcatgagcagattcaacattaaacataaatgaggggtaaaag 223  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||    
T  39848261 taagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaag 39848325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 400
Target Start/End: Original strand, 37466852 - 37467010
Alignment:
Q  236 ccaacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagc 335  Q
    ||||||||||||||||| ||||||    || ||||||| |||  |||||| |||||||||| |   |||||||| ||||  |||| || |||||| ||||    
T  37466852 ccaacatttgcctaaaagccaaca----gacatgaaaaggtcgcaaaataagaagcttgaaag---tatatgagaaaaatgatatcgataaactttaagc 37466944  T
Q  336 aatctcatg-aacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgta 400  Q
    ||  ||||| |||||||||||| ||||||||| || | |||||| || ||||  || |||||||||    
T  37466945 aagatcatggaacttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgta 37467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 39848084 - 39848124
Alignment:
Q  13 cagacatgaatcacaaaaaattaagcaccctcacaagcatt 53  Q
    |||||||||||| ||||||| ||||||||||| ||||||||    
T  39848084 cagacatgaatcgcaaaaaactaagcaccctcgcaagcatt 39848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 9939603 - 9939563
Alignment:
Q  115 taaagctcccgcatatgcagggtccgagaggggggtcccac 155  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  9939603 taaagctcccgcatacgcagggtccgagaagggggtcccac 9939563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 43771 - 43734
Alignment:
Q  118 agctcccgcatatgcagggtccgagaggggggtcccac 155  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  43771 agctcccgcatatgcagggtccgagaaaggggtcccac 43734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 54175200 - 54175156
Alignment:
Q  96 aaagggcagcccggtttgataaagctcccgcatatgcagggtccg 140  Q
    |||||||||||||||    ||||||||||||||||||||||||||    
T  54175200 aaagggcagcccggtgcactaaagctcccgcatatgcagggtccg 54175156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University