View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19282_low_7 (Length: 251)
Name: NF19282_low_7
Description: NF19282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19282_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 15644729 - 15644563
Alignment:
| Q |
69 |
tttggcaacattgatcaaatcactggccgaaatgattaggaaagttaaatacctattacttaagtaaccatattttgatactaactcc-nnnnnnnncta |
167 |
Q |
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| T |
15644729 |
tttgacaacattgatcaaatcattgaccgaaatgattaggaaagttaaatacctattacttaagttaccatattttgatactaactcctttttttttcta |
15644630 |
T |
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| Q |
168 |
ccaatcaaaaactataattcattttcctatagtgaataaaaatataattcaaaaaggagtggagagag |
235 |
Q |
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| T |
15644629 |
ccaatcaaaaacactaattcattttcctatagtgaat-aaaatataattcaaaaaggagtggagagag |
15644563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 15644925 - 15644882
Alignment:
| Q |
8 |
aaaatttatggtgaaatgacatttagaatgtgaggaaatgcgac |
51 |
Q |
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| T |
15644925 |
aaaatttatggtgaaatgacatttaaaatgtgaggaaatgcgac |
15644882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 15644863 - 15644821
Alignment:
| Q |
5 |
cacaaaatttatggtgaaatgacatttagaatgtgaggaaatg |
47 |
Q |
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| T |
15644863 |
cacaaaattcatggtgaaatgacatttagaatgtgaggaaatg |
15644821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 15644995 - 15644951
Alignment:
| Q |
3 |
ggcacaaaatttatggtgaaatgacatttagaatgtgaggaaatg |
47 |
Q |
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| T |
15644995 |
ggcacaaaattcatggtgaaatgacatttagaatgtgaagaaatg |
15644951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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