View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_high_2 (Length: 456)
Name: NF19283_high_2
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 10120914 - 10120479
Alignment:
| Q |
1 |
caaaaaggcatcaccatactctaagaataagaattcctacctgtatcaatgaaaccaacaatgatatttgcttggtttttgtttgagtatcccatattct |
100 |
Q |
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| T |
10120914 |
caaaaaggcatcaccatactctaagaatacgac-----acctgtatcaatgaaaccaacaataacatttgcttggtttttgtttgagtatcccatattct |
10120820 |
T |
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| Q |
101 |
ccatggtttcatcatccaaaagtcccataaagtcccatgaatgagtagtatacaacnnnnnnnnagaattggggaacacagaaactactcccggcatttc |
200 |
Q |
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| T |
10120819 |
ccatggtttcatcatccaaaagtcccataaagtcccatgaatgagtagtatacaactttcttttagaattggggaacacagaaactactcccggcatttc |
10120720 |
T |
|
| Q |
201 |
tggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatcctttaagcattgaagctttaaggaagaggaaaatgtcactgacttgaaat |
300 |
Q |
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| T |
10120719 |
tggtcacattcaaaccaaataaataagtaaacaacaaaaattataggatactttaagcattgaagctttaaggaagaggaaaatgtcactgacttgaaat |
10120620 |
T |
|
| Q |
301 |
ttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcctgtgcttgttcaacactgttaaaa |
400 |
Q |
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| T |
10120619 |
ttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgtaaatatgtgaagcctgtgcttgttcaacactgttaaaa |
10120520 |
T |
|
| Q |
401 |
aataaggaaaaatcacatacctgaaattacatagaaaaagg |
441 |
Q |
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| T |
10120519 |
aataaggaaaaatcacatacctgaaattacatagaaaaagg |
10120479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 30629840 - 30629948
Alignment:
| Q |
43 |
gtatcaatgaaaccaacaatgatatttgcttggtttttgtttgagtatcccatattctccatggtttcatcatccaaaagtcccataaagtcccatgaat |
142 |
Q |
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|||||||||||||||| ||||||||| |||| ||||| |||||| || | | | |||||||||| |||||| ||||||||||| || |||||||||| |
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| T |
30629840 |
gtatcaatgaaaccaatgatgatattttcttgatttttaactgagtagccaagagtttccatggtttgatcatctaaaagtcccatgaaatcccatgaat |
30629939 |
T |
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| Q |
143 |
gagtagtat |
151 |
Q |
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|||| |||| |
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| T |
30629940 |
gagttgtat |
30629948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 30630322 - 30630415
Alignment:
| Q |
296 |
gaaatttggtaagcttgttcattggtcaactttgctgcaaagcctttgaaaccatgtttgtagctgcaaatatgtgaagcctgtgcttgttcaa |
389 |
Q |
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| T |
30630322 |
gaaattttggaagcttgttcatcagtgagcttagctgcaaagcctctgaatccatgtctatagctataaatatgagaagcttgtgcttcttcaa |
30630415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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