View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_high_4 (Length: 357)
Name: NF19283_high_4
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 11771518 - 11771177
Alignment:
| Q |
16 |
agagagagatctaaccagtaggtctttgttttaatgtggaaaagaaaacggtgcaatgtatactcaagcaatgtccacacaaaaatgccaagaaccacca |
115 |
Q |
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| T |
11771518 |
agagagagatctaaccagtaggtctttgttttaatgtggaaaagaaaacggtgcaatgtatactcaagcaatgtccacacaaaaatgccaagaaccacca |
11771419 |
T |
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| Q |
116 |
tcagagctatatgtggacagctgaggcccatttgtatagagttatatacaaaccaacatacaactggaagccaaataactggtattgcccaccagacagt |
215 |
Q |
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| T |
11771418 |
tcagagctatatgtggacagctgaggcccatttgtatagagttatatacaaaccaacatacaactggaagccaaataactggtattgcccaccagacagt |
11771319 |
T |
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| Q |
216 |
gagggtcaaggactgttccaaacagtaacaagtcaagtacacatgatattaaatgtataacagaacatacaaattaaaatcttcaattgcttgtaatgtg |
315 |
Q |
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| T |
11771318 |
gagggtcaaggactgttccaaacagtaacaagtcaagtacacatgatattaaatgtataacataacatacaaattaaaaccttcaattgcttgtaaaatg |
11771219 |
T |
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| Q |
316 |
gtagattattaaaaggattgaagatagcaacgtgatcgcttt |
357 |
Q |
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| T |
11771218 |
gtagattattaaaaggattgaagatagcaacgtgatcgcttt |
11771177 |
T |
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