View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_low_1 (Length: 635)
Name: NF19283_low_1
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 11771178 - 11770555
Alignment:
| Q |
1 |
ttagttgcaacatgccaatcaaaatcaaaggaaacctttatccaaaagctatataaccagaaaactttatcattactataaaactagaaatacacggaaa |
100 |
Q |
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| T |
11771178 |
ttagttgcaacatgctaatcaaaatcaaaggaaacctttatccaaaagctatataaccagaaaactttatcattactataaaactagaaatacacggaaa |
11771079 |
T |
|
| Q |
101 |
caatataagattaggagtgattattcacggagaaacttagattagagagtattcatgacaagataactgaaactcgcccagtgaagtttcatcatgtgag |
200 |
Q |
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| T |
11771078 |
caatataagattaggagtgattattcacagagaaacttagattagagagtattcatgacaagataactgaaactcgcccagtgaagtttcatcatgtgag |
11770979 |
T |
|
| Q |
201 |
aaaaaggcaaataaaaatccctgnnnnnnntatgacatgtggaagatagcgaaataaattttctggaggaactacggtcatagaaaaattgtgaagaaac |
300 |
Q |
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| T |
11770978 |
aaaaaggcaaataaaaatccctgaaaaaa-tatgacatgtggaagatagcgaaataaattttctggaggaactacggtcatagaaaaattgtgaagaaac |
11770880 |
T |
|
| Q |
301 |
ctatgaaaaagaccttgctctaaacatttttaccaaaaacttgnnnnnnnataaatccaacatcattaactgatctgcctagcctagc-----aatcccc |
395 |
Q |
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| T |
11770879 |
ctatgaaaaagaccttgctctaaacatttttaccaaaaacttgtttttttataaatccaacatcattaactgatctgcctagcctagcctagcaatcccc |
11770780 |
T |
|
| Q |
396 |
acccccgtccctacaccgagtgatacaaggcttagttgttgtggacatgtttaatgatatacctccagaacctcattttgaaagaaacggggaccttcct |
495 |
Q |
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| T |
11770779 |
acccccgtccctacaccgagtgatacaaggcttagttgttgtggacatgtttaatgatatacctccagaacctcattttgaaagaaacggggaccttcct |
11770680 |
T |
|
| Q |
496 |
tgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacctacagaacattaaaaatttgttcaggctctttcaaaattactaa |
595 |
Q |
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| T |
11770679 |
tgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacctacagaacattaaaaatttgttcaggctctttcaaaattactaa |
11770580 |
T |
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| Q |
596 |
gtatacattatatgaagtacaaact |
620 |
Q |
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| T |
11770579 |
gtatacattatatgaagtacaaact |
11770555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 552
Target Start/End: Original strand, 38155349 - 38155427
Alignment:
| Q |
474 |
tgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacct |
552 |
Q |
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| T |
38155349 |
tgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacct |
38155427 |
T |
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