View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_low_3 (Length: 455)
Name: NF19283_low_3
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 148 - 439
Target Start/End: Complemental strand, 44965850 - 44965559
Alignment:
| Q |
148 |
ccaattttgaaacaaattttacctctggaattgaaggatctcttgcaatgaagaatagcactttgaattccatcatgctgctgcaacagcgtatcatcac |
247 |
Q |
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| T |
44965850 |
ccaattttgaaacaaattttacctctggaattgaaggatctcttgcaatgaagaatagcactttgaattccatcatgctgctgcaacaacgtatcatcac |
44965751 |
T |
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| Q |
248 |
tcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctg |
347 |
Q |
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| T |
44965750 |
tcctgttcgccggagaactagctccggccaccgtacccgatgacctactcttacccaaatgcttcgttaccactctcatcccagccggaaaactcccctg |
44965651 |
T |
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| Q |
348 |
tttctctttcctcaaagagccaaccgccggtgaagacgacggcgaagccgtcactgtcatcccctcgccggagaatttcaccttatcaccat |
439 |
Q |
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| T |
44965650 |
tttctctttcctcaaagagccaaccgccggtgaagacgacggtgaagctgtcactgtcatcccctcgccggagaatttcaccttatcaccat |
44965559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 44965997 - 44965915
Alignment:
| Q |
1 |
ttcaatacatcacacttcatcctcaaaagagtttcttgtcgaatacattgatccgtcaacatcaacacccattgaagaatctg |
83 |
Q |
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| T |
44965997 |
ttcaatacatcacacttcatcctcaaaagagtttcttgtcgaatacattgatccgtcagcatcaacacccattgaagaatctg |
44965915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 2502611 - 2502541
Alignment:
| Q |
177 |
attgaaggatctcttgcaatgaagaatagcactttgaattccatcatgctgctgcaacagcgtatcatcac |
247 |
Q |
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| T |
2502611 |
attgaaggatctcttgcagtgtaaaatggctccttgaattccatcttgctgctgcaaaagcgaatcatcac |
2502541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 28698056 - 28697958
Alignment:
| Q |
207 |
actttgaattccatcatgctgctgcaacagcgtatcatcactcctgttcgccggagaactggctccggccaccgtacccgatgacctactcttacccaaa |
306 |
Q |
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| T |
28698056 |
actttggattccatcatcttgctgcaacaacat-tcatcactcttattcgccggagtaccaactccggccacggtatccggcgacctactcttacccaaa |
28697958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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