View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_low_6 (Length: 249)
Name: NF19283_low_6
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_low_6 |
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| [»] scaffold0721 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 31437067 - 31436833
Alignment:
| Q |
5 |
tgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctgacggagtaggactcaaagattttgctagctttgacatga |
104 |
Q |
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| T |
31437067 |
tgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctaattgaccaacctgacggagtaggactcaaagattttgctagctttgacatga |
31436968 |
T |
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| Q |
105 |
aagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttcttt |
204 |
Q |
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| T |
31436967 |
aagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttcttt |
31436868 |
T |
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| Q |
205 |
cggaaattgaggaatactagagcagaaagagtattat |
241 |
Q |
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| T |
31436867 |
cggaaattgagg--taatagagcagaaagagtattat |
31436833 |
T |
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Target: scaffold0721 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0721
Description:
Target: scaffold0721; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 6187 - 6256
Alignment:
| Q |
55 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
124 |
Q |
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| T |
6187 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
6256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 2706 - 2775
Alignment:
| Q |
55 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
124 |
Q |
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| T |
2706 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
2775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 15061353 - 15061284
Alignment:
| Q |
55 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
124 |
Q |
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| T |
15061353 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
15061284 |
T |
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