View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19283_low_7 (Length: 247)
Name: NF19283_low_7
Description: NF19283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19283_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31437050 - 31437281
Alignment:
| Q |
1 |
aaaatgtgaccaagcacatcgagtaacatctatcgacctttcttccaagtcactcaatggaacacttccttccgatctcaactcgctctcccaactcacc |
100 |
Q |
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| T |
31437050 |
aaaatgtgaccaagcacaccgagtaacatctatcgacctttcttccaagtcactcaatggaacacttccttccgatctcaactcgctctcccaactcacc |
31437149 |
T |
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| Q |
101 |
gccctctttcttcagtccaactctctttctggcgcattaccatcactcgctaacctcgccttgcttcaaacggtttcccttggccaaaacaacttcttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31437150 |
tccctctttcttcagtccaactctctttctggcgcattaccatcactcgctaacctcgccttgcttcaaacggtttcccttggccaaaacaacttcttat |
31437249 |
T |
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| Q |
201 |
cagttcctgttggctgcttcaaaggactcact |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31437250 |
cagttcctgttggctgcttcaaaggactcact |
31437281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 15061408 - 15061542
Alignment:
| Q |
23 |
gtaacatctatcgacctttcttccaagtcactcaatggaacacttccttccgatctcaactcgctctcccaactcaccgccctctttcttcagtccaact |
122 |
Q |
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| T |
15061408 |
gtaacatctatcaagcttgcttccatgtcacttattggaacaattccttctgatctcaactcactttcatcactcacgtccctagttctattttccaact |
15061507 |
T |
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| Q |
123 |
ctctttctggcgcattaccatcactcgctaacctc |
157 |
Q |
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| T |
15061508 |
ctctttccggtgcattaccctcacttgctaacctc |
15061542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 38162084 - 38161951
Alignment:
| Q |
50 |
tcactcaatggaacacttccttccgatctcaactcgctctcccaactcaccgccctctttcttcagtccaactctctttctggcgcattaccatcactcg |
149 |
Q |
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||||||| |||||| | ||||||||||| ||||| ||||| || ||||| | || | |||||| |||||||| || | ||||| || || || |||| |
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| T |
38162084 |
tcactcaccggaacattaccttccgatctgaactcactctctcagctcactacactttctcttcaatccaactcactcaccggcgcgttgccttctctcg |
38161985 |
T |
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| Q |
150 |
ctaacctcgccttgcttcaaacggtttcccttgg |
183 |
Q |
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| T |
38161984 |
cgaacctcaccatgcttcaaacggttttccttgg |
38161951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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