View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19284_high_1 (Length: 329)

Name: NF19284_high_1
Description: NF19284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19284_high_1
NF19284_high_1
[»] chr4 (8 HSPs)
chr4 (21-313)||(26646683-26646975)
chr4 (89-202)||(13682888-13683001)
chr4 (19-178)||(22187990-22188155)
chr4 (19-97)||(13683383-13683462)
chr4 (19-103)||(13689704-13689789)
chr4 (72-141)||(33077994-33078063)
chr4 (135-191)||(13689467-13689523)
chr4 (19-59)||(26646390-26646430)
[»] chr8 (2 HSPs)
chr8 (64-202)||(37001549-37001686)
chr8 (19-202)||(36991783-36991969)
[»] chr7 (1 HSPs)
chr7 (19-202)||(8596630-8596820)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 26646683 - 26646975
Alignment:
Q  21 caacactattgtatcacacttttactattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaagactcaggtcaataaataa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26646683 caacactattgtatcacacttttactattaactaattttttaaattaaacaatcacacgaatacttaatataaagaaacaagactcaggtcaataaataa 26646782  T
Q  121 atcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcatatataggtttatactcttt 220  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646783 gtcatatatggtacctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcatatataggtttatactcttt 26646882  T
Q  221 atcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || || || ||||||||||||||||||||||||    
T  26646883 atcaacaacccttttaagtagggatggcacatcatcatcaaccaccaactcaaaacaatctttctcaattatgacaaacttatccgtagtatt 26646975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13683001 - 13682888
Alignment:
Q  89 tataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtg 188  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  13683001 tataaagaaacaagacccaggtcaataaataaatcatatatgatacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 13682902  T
Q  189 acaatgctttcata 202  Q
    ||| | ||||||||    
T  13682901 acatttctttcata 13682888  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 22187990 - 22188155
Alignment:
Q  19 agcaacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaaga-ctcaggtcaataa 116  Q
    ||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||||||| |  ||||||||||||||| | |||||| | || |||| |||    
T  22187990 agcaacactattgtatcacactttttattattaactagtttttaaaattgaacaatcatatgaatacttaatataaaaatacaagatcccatgtcattaa 22188089  T
Q  117 ataaatcatatat----ggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaacc 178  Q
    |||||||||||||    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22188090 ataaatcatatatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacc 22188155  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 13683462 - 13683383
Alignment:
Q  19 agcaacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaa 97  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  13683462 agcaacactattgtatcacactttttattattaactaattttttaaattaaacaatcatataaatacttaatataaagaa 13683383  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 13689789 - 13689704
Alignment:
Q  19 agcaacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaaga 103  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |   |||||||||||||| | ||||||    
T  13689789 agcaacactattgtatcacactttttattattaactaattttttaaattaagcaatcatatatatacttaatataaaaatacaaga 13689704  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 33078063 - 33077994
Alignment:
Q  72 atcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaata 141  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||||| || ||||||| |||||||    
T  33078063 atcacacgaatacttaatataaagaaacaagatccaggtcaataaataaatgatgtatggtacctgaata 33077994  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 13689523 - 13689467
Alignment:
Q  135 ctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgaca 191  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  13689523 ctgaatacatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgaca 13689467  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 26646390 - 26646430
Alignment:
Q  19 agcaacactattgtatcacacttttactattaactaatttt 59  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  26646390 agcaacactaatgtatcacacttttattattaactaatttt 26646430  T

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Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 37001549 - 37001686
Alignment:
Q  64 attaaacaatcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttc 163  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  37001549 attaaacaatcacacgaatacttaatataaagaaacaagac-caggtcaataaatatatcataaatggtacctgaatagatagtcaagaacaaatatttc 37001647  T
Q  164 cagaatcatgcaaccaaactgtgtgacaatgctttcata 202  Q
    || |||| ||||||| |||| ||||||||||||||||||    
T  37001648 cacaatcctgcaacccaactctgtgacaatgctttcata 37001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 36991783 - 36991969
Alignment:
Q  19 agcaacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaa-acaaga-ctcaggtcaata 115  Q
    ||||||||| ||| ||||||||||| | |||||| |||||  | ||||||||||||||||| ||||||||||||||| || |||||| | ||  ||| ||    
T  36991783 agcaacactgttgcatcacactttttattattaagtaattcataaaattaaacaatcacacgaatacttaatataaaaaatacaagatcccatttcatta 36991882  T
Q  116 aataaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcata 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  36991883 aataaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcctgcaacccaactctgtgacaatgctttcata 36991969  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 8596630 - 8596820
Alignment:
Q  19 agcaacactattgtatcacactttt-actattaactaattttttaaatt-aaacaatcacaccaatacttaatataaagaaacaagactcaggt-caata 115  Q
    ||||||||| ||||||||||||||| | ||| ||||||||||| ||||| ||||||||| |  ||||||||||||||| | ||||||  | | | || ||    
T  8596630 agcaacactgttgtatcacactttttattataaactaatttttaaaatttaaacaatcatatgaatacttaatataaaaatacaagatcctgtttcatta 8596729  T
Q  116 aataaatcatatatggtatctgaatag----atagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcata 202  Q
    |||||||||||||||||| ||||||||    ||||||||||||||||||||||| |||||||||||| |||| |||| || ||||||||||    
T  8596730 aataaatcatatatggtacctgaatagatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtggcattgctttcata 8596820  T

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