View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19284_high_2 (Length: 314)
Name: NF19284_high_2
Description: NF19284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19284_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 51502924 - 51502821
Alignment:
| Q |
5 |
caatatccaataatgaacgtttttaaatgctgatcatggcagatgaagtattaagaatgcaactaaatcagctttacattatttttactttatatgattc |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51502924 |
caatatccaataaagaacgtttttaaatgctgatcatggcagatgaggtattaagaatgcaactaaatcagctttacattatttttactttatatgattc |
51502825 |
T |
|
| Q |
105 |
atat |
108 |
Q |
| |
|
|||| |
|
|
| T |
51502824 |
atat |
51502821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 51502729 - 51502635
Alignment:
| Q |
203 |
ctcatatttggttcttccaaacctctttgagtcttaggatctgtttcatttgtcaacaagcaagtgtaccaaaacacataaaccacatcaaaaag |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51502729 |
ctcatatttggttcttccaaacctctttgagtcctaggatctgtttcacatgtcaacaagcaagtgtaccaaaacacataaaccacatcaaaaag |
51502635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 51499588 - 51499552
Alignment:
| Q |
262 |
gcaagtgtaccaaaacacataaaccacatcaaaaagt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51499588 |
gcaagtgtaccaaaacacataaaccacatcaaaaagt |
51499552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University