View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19285_high_10 (Length: 325)

Name: NF19285_high_10
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19285_high_10
NF19285_high_10
[»] chr3 (7 HSPs)
chr3 (32-325)||(26444853-26445146)
chr3 (208-321)||(2353265-2353378)
chr3 (245-321)||(19930008-19930084)
chr3 (245-321)||(42253534-42253610)
chr3 (268-321)||(19935230-19935283)
chr3 (269-321)||(9372208-9372260)
chr3 (266-321)||(42256809-42256864)
[»] chr1 (5 HSPs)
chr1 (89-321)||(21501066-21501298)
chr1 (74-262)||(8040728-8040915)
chr1 (269-321)||(43254184-43254236)
chr1 (266-321)||(49387599-49387654)
chr1 (243-321)||(9111511-9111590)
[»] chr2 (5 HSPs)
chr2 (70-312)||(65967-66210)
chr2 (101-318)||(27082917-27083135)
chr2 (266-321)||(10938058-10938112)
chr2 (266-321)||(10941419-10941473)
chr2 (266-321)||(10947288-10947342)
[»] chr8 (2 HSPs)
chr8 (112-324)||(41739716-41739934)
chr8 (266-321)||(33940435-33940490)
[»] chr7 (3 HSPs)
chr7 (266-321)||(13815807-13815862)
chr7 (258-321)||(15569635-15569698)
chr7 (269-321)||(32352425-32352477)
[»] chr6 (4 HSPs)
chr6 (266-321)||(24044926-24044981)
chr6 (266-321)||(2936141-2936196)
chr6 (259-321)||(19973737-19973799)
chr6 (266-321)||(24041623-24041678)
[»] chr4 (5 HSPs)
chr4 (245-321)||(13250497-13250573)
chr4 (270-321)||(31767445-31767496)
chr4 (269-321)||(43287917-43287970)
chr4 (266-321)||(13010526-13010582)
chr4 (269-321)||(43472172-43472224)
[»] chr5 (2 HSPs)
chr5 (239-321)||(39292167-39292250)
chr5 (275-321)||(13292022-13292068)
[»] scaffold0076 (1 HSPs)
scaffold0076 (239-321)||(6726-6809)
[»] scaffold0028 (1 HSPs)
scaffold0028 (243-321)||(110189-110268)
[»] scaffold0933 (1 HSPs)
scaffold0933 (271-321)||(813-863)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 325
Target Start/End: Original strand, 26444853 - 26445146
Alignment:
Q  32 aattaatcaactatacaaagtattatgcatgtagtgaatgttgtaaaattaagcgtaaaattattctcaaataaaaattaacatatccatataaacatca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26444853 aattaatcaactatacaaagtattatgcatgtagtgaatgttgtaaaattaagcgtaaaattattctcaaataaaaattaacatatacatataaacatca 26444952  T
Q  132 attgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaa 231  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26444953 attgaatataagcaaaagagaaggatcgataaatttatctgtccttactaattttagatagctagagtactgacataactctatcaatatccttcaccaa 26445052  T
Q  232 caactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataatcgt 325  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26445053 caactcatatgtaacctgcaaaataataaacggatatataacatgaggcatgacaaagtcactgtccttaaggatttatccgcctcataatcgt 26445146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 208 - 321
Target Start/End: Complemental strand, 2353378 - 2353265
Alignment:
Q  208 aactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatt 307  Q
    ||||||||||| ||  | |||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||  ||||||  |||||||||||||    
T  2353378 aactctatcaacattctccaccaacaactcatatgtaacctgcaaaataataaaccgttatataacctgaggcatgatgaagtcattgtccttaaggatt 2353279  T
Q  308 tatccgcctcataa 321  Q
    ||||||||||||||    
T  2353278 tatccgcctcataa 2353265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 19930008 - 19930084
Alignment:
Q  245 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||||| |||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaaggatttatccgcctcataa 19930084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 42253534 - 42253610
Alignment:
Q  245 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||||| |||||   ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaaggatttacccgcctcataa 42253610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 19935230 - 19935283
Alignment:
Q  268 tataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  19935230 tataatatgaggcgtgacaaagtcactgtccttaaggatttatcctcctcataa 19935283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 9372208 - 9372260
Alignment:
Q  269 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  9372208 ataacctgaggcatgacgaagtcactgtccttaaggatttattcgcctcataa 9372260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 42256809 - 42256864
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| ||||||| |||| ||| |||||||||||||| | ||||||    
T  42256809 tatataacatgaggcgtgacaaaatcactgtctttaaggatttatcctcttcataa 42256864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 89 - 321
Target Start/End: Original strand, 21501066 - 21501298
Alignment:
Q  89 aaattattctcaaataaaaattaacatatccatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttag 188  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  21501066 aaattattctcaaataaaaattaacatatacatataaacatcaattgaatataagcaaaagagaaggatcgataaacttatatgttcttaataattttag 21501165  T
Q  189 atagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaa 288  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||| |||||||    
T  21501166 atagctagagtactgacataactctgtcaatgtccttcaccaacaactcatatgtaacctgcaaaataataaatagttatataatatgaggcgtgacaaa 21501265  T
Q  289 gtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||| |  || ||||||||||||||| |||||||    
T  21501266 gtcgctatctttaaggatttatccgtctcataa 21501298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 74 - 262
Target Start/End: Complemental strand, 8040915 - 8040728
Alignment:
Q  74 gtaaaattaagcgtaaaattattctcaaataaaaattaacatatccatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatttgt 173  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||| |||    
T  8040915 gtaaaattaaacgtaaaattattctcaaataaaaattaacatatacatataaacatcaattgaatataaataaaagagaaggatcgataaacttatatgt 8040816  T
Q  174 ccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaac 262  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  8040815 ccttaataattttatatagctagagtactgacataactctgtcaatatc-ttcaccaacaacttatatgtaacttgcaaaataataaac 8040728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 43254236 - 43254184
Alignment:
Q  269 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  43254236 ataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataa 43254184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 49387599 - 49387654
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| ||||| ||||    
T  49387599 tatataacatgaggcgtgacaaagtcactggccttaaggatttattcgccttataa 49387654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 9111511 - 9111590
Alignment:
Q  243 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataa 321  Q
    |||||||||||||| |||||   |||||||  |||||| ||||| |||||| |||||| |||| ||||||||||||||||    
T  9111511 taacctgcaaaatagtaaactgttatataatctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataa 9111590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 70 - 312
Target Start/End: Original strand, 65967 - 66210
Alignment:
Q  70 tgttgtaaaattaagcgtaaaa-ttattctcaaataaaaattaacatatccatataaacatcaattgaatataagcaaaagagaaggatcgataaattta 168  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| | || | |||    
T  65967 tgttgtaaaattaagcgtaaaaattattctcaaataaaaattaatatatgcatatatacatcaattgaatataagcaaaagagaaggatggttacactta 66066  T
Q  169 tttgtccttaataattttagatagctagagtactgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaatat 268  Q
    | | ||||||||| |||||||||||||| || || |||||||||| |||||||| ||||||||||||||||||||||| |  ||||||||||| |  | |    
T  66067 tgtatccttaatatttttagatagctagggtgctaacataactctgtcaatatctttcaccaacaactcatatgtaacttataaaataataaatagttgt 66166  T
Q  269 ataacatgaggcatgacaaagtcaccgtccttaaggatttatcc 312  Q
    |||||||||||| ||| ||||||||  |  ||||||||||||||    
T  66167 ataacatgaggcgtgataaagtcactatatttaaggatttatcc 66210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 318
Target Start/End: Original strand, 27082917 - 27083135
Alignment:
Q  101 aataaaaattaacatatccatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagt- 199  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||  |||| ||||| |||| ||||| || || ||||  ||| | ||  |     
T  27082917 aataataattaacatatacatatgaacatcaattaaatataagcaaaagagatagatcaataaacttatctgtccctagtatttttgtataaccaggttc 27083016  T
Q  200 actgacataactctatcaatatcattcaccaacaactcatatgtaacctgcaaaa-taataaacaaatatataacatgaggcatgacaaagtcaccgtcc 298  Q
    | |||||| |||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||   ||||||| |||||||||||||||||| | ||||    
T  27083017 aatgacatgactctatcaatatccttcaccaacaactca-atgtaacctacaaaaataataaactgttatataagatgaggcatgacaaagtcgctgtcc 27083115  T
Q  299 ttaaggatttatccgcctca 318  Q
    | ||||||||||||||||||    
T  27083116 tgaaggatttatccgcctca 27083135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 10938058 - 10938112
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  10938058 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataa 10938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 10941419 - 10941473
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  10941419 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataa 10941473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 10947288 - 10947342
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  10947288 tatataacatgaggcgtgacaa-gtcactgtccttaaggatttattcgcctcataa 10947342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 41739716 - 41739934
Alignment:
Q  112 acatatccatataaacatcaattgaatataagcaaaagagaaggatcgataaatttatttgtccttaataattttagatagctagagtactgacataact 211  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| || ||  | |||  ||| ||||||| ||||  |||  |||  | ||||||| |||    
T  41739716 acatatccatataaacaacaattaaatataagtaaaagagaaggttcaatggacttacctgttcttaatatttttgtataattaggatcctgacatgact 41739815  T
Q  212 ctatcaatatcattcaccaacaactcatatgtaacctgcaaaataataaacaaata------tataacatgaggcatgacaaagtcaccgtccttaagga 305  Q
    ||||||||||  ||||| |||||||||||| |||||||||||||| ||||||  ||      |||||| |||||| |||  |||||||  ||||||||||    
T  41739816 ctatcaatattcttcactaacaactcatatctaacctgcaaaatagtaaacagttatgtaattataacctgaggcgtgatgaagtcactatccttaagga 41739915  T
Q  306 tttatccgcctcataatcg 324  Q
    |||||||| ||||||||||    
T  41739916 tttatccgtctcataatcg 41739934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 33940435 - 33940490
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||| |||||| |||| ||||||| ||||||||||||||||||| |||||||    
T  33940435 tatataacctgaggcttgacgaagtcactgtccttaaggatttatccgtctcataa 33940490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 13815862 - 13815807
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  13815862 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataa 13815807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 15569698 - 15569635
Alignment:
Q  258 taaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||| ||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  15569698 taaacatatatataacctgaggcgtgacaaagtcactgtccttagggatttatccgcctcataa 15569635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 32352425 - 32352477
Alignment:
Q  269 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||| ||||| |||||||||||| |||||||||||||||| ||||||||||    
T  32352425 ataacacgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataa 32352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 24044926 - 24044981
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  24044926 tatataacatgaggcgtgacaaagtcactgtccttaaggatttattcgcctcataa 24044981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 2936141 - 2936196
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||||||  |||| ||||||| |||||||||||||||||||||||||||    
T  2936141 tatataacatgaggtgtgacgaagtcactgtccttaaggatttatccgcctcataa 2936196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 19973799 - 19973737
Alignment:
Q  259 aaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||| || |||||| |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  19973799 aaacatatgtataacctgaggcgtgacaaagtcactgtccttaaagatttatccgcctcataa 19973737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 24041623 - 24041678
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||| |||| |||||||||||| ||| ||||| |||||| ||||||||||    
T  24041623 tatataacataaggcgtgacaaagtcactgtctttaagaatttattcgcctcataa 24041678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 13250497 - 13250573
Alignment:
Q  245 acctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||||| ||| |   ||||||||||||||| ||||||||||||  ||||||| ||||||||| ||||||||    
T  13250497 acctgcaaaatagtaagccgttatataacatgaggcgtgacaaagtcactctccttaaagatttatccacctcataa 13250573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 31767445 - 31767496
Alignment:
Q  270 taacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||| ||||||| ||||  ||||||||||||||||||||||||||    
T  31767445 taacatgaggcgtgacaaaatcactatccttaaggatttatccgcctcataa 31767496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 43287970 - 43287917
Alignment:
Q  269 ataacatgaggcatgacaaagtcaccgtcctt-aaggatttatccgcctcataa 321  Q
    |||||||||||| |||||||||||| |||||| |||||||||| ||||||||||    
T  43287970 ataacatgaggcgtgacaaagtcactgtccttaaaggatttattcgcctcataa 43287917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 13010526 - 13010582
Alignment:
Q  266 tatataacatgaggcatgacaaagtcaccgtccttaaggattt-atccgcctcataa 321  Q
    |||||||| |||||| ||||| |||||| |||||| ||||||| |||||||||||||    
T  13010526 tatataacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataa 13010582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 43472224 - 43472172
Alignment:
Q  269 ataacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||||  ||||||| |||| ||||||| |||||||| ||||||||||    
T  43472224 ataacatgaggtgtgacaaaatcactgtccttagggatttattcgcctcataa 43472172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 39292250 - 39292167
Alignment:
Q  239 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataa 321  Q
    |||||||||||||||| ||||||| | ||| |||| |||||  ||| | |||||| ||||||||||| ||||||||||||||||    
T  39292250 tatgtaacctgcaaaacaataaaccattatctaacctgaggtgtgatatagtcactgtccttaaggattttatccgcctcataa 39292167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 13292068 - 13292022
Alignment:
Q  275 tgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    ||||||||||| |||| || |||||||| ||||||||||||||||||    
T  13292068 tgaggcatgacgaagttactgtccttaaagatttatccgcctcataa 13292022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 6726 - 6809
Alignment:
Q  239 tatgtaacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataa 321  Q
    |||||||||||||||| ||||||| | ||| |||  |||||| ||||| |||||| ||| || |||| ||||||||||||||||    
T  6726 tatgtaacctgcaaaacaataaaccattatctaaactgaggcgtgacatagtcactgtcattgaggattttatccgcctcataa 6809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 110268 - 110189
Alignment:
Q  243 taacctgcaaaataataaacaaatatataacatgaggcatgacaaagtcaccgtccttaagga-tttatccgcctcataa 321  Q
    |||||||||||||| ||| |   ||| ||||||||||| ||||| |||||| |||||| |||| ||||||||||||||||    
T  110268 taacctgcaaaatagtaatctgttatctaacatgaggcgtgacatagtcactgtccttgaggattttatccgcctcataa 110189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 863 - 813
Alignment:
Q  271 aacatgaggcatgacaaagtcaccgtccttaaggatttatccgcctcataa 321  Q
    |||||||||| |||||||||||| ||||||| | |||| ||||||||||||    
T  863 aacatgaggcgtgacaaagtcactgtccttaggtatttttccgcctcataa 813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University