View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19285_high_12 (Length: 289)

Name: NF19285_high_12
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19285_high_12
NF19285_high_12
[»] chr8 (1 HSPs)
chr8 (2-289)||(30683234-30683508)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 289
Target Start/End: Complemental strand, 30683508 - 30683234
Alignment:
Q  2 catcaggtgtggcaaacagttttgttggaataagtttagttgctttgttactgtcaatnnnnnnntttgcacaaataagtacgagaatatcaacatcaaa 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30683508 catcaggtgtggcaaacagttttgttggaataagttttgttgctttgttactgtcaataaaaacatttgcacaaataagtacgagaatatcaacatcaaa 30683409  T
Q  102 atagaaaaaatttattgtataataaaatatcatgtacaaatcaaacaagcctagcatatatgattgatnnnnnnnnnnnnnnnnnnnngttgttagaacg 201  Q
    |||| |||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||                    ||||||||||||    
T  30683408 atagcaaaaatttgttgtataat-------catgtacaaatcaaacaagcctagcatatatgattgataaagaagaaaaaga------gttgttagaacg 30683322  T
Q  202 gacggaggaggagcatggacgcagcagcagtcttgaaaaaacgagaagaggaagaggaacagaaaccaggggagaactttcatcgttt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30683321 gacggaggaggagcatggacgcagcagcagtcttgaaaaaacgagaagaggaagaggaacagaaaccaggggagaactttcatcgttt 30683234  T

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