View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_high_18 (Length: 235)
Name: NF19285_high_18
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8350265 - 8350046
Alignment:
| Q |
1 |
aactttgtcatgaagggaaatgtggtctttttggtgaaggtggtttgattatgtttgatgttagtaatgttgctgtgagttataatgttatggatattgt |
100 |
Q |
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| T |
8350265 |
aactttgtcatgaagggaaatgtggtctttttggtgaaggaggtttgattatgtttgatgttagtaatgttgctgtgagttataatgttatggatattgt |
8350166 |
T |
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| Q |
101 |
tcctgttgctattattggaatcattggtggtgtcttgggaagcctttataactatcttcttcataagatccttagggtctataatctcatcaatcagtaa |
200 |
Q |
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| T |
8350165 |
tcctgttgctattattggaatcattggtggtgtcttgggaagcctttataactatcttcttcataagatccttagggtctataatctcatcaatcagtaa |
8350066 |
T |
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| Q |
201 |
gtaatctcttcatactcatg |
220 |
Q |
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| T |
8350065 |
gtaatctcttcatactcatg |
8350046 |
T |
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Back To:
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 10398070 - 10398256
Alignment:
| Q |
15 |
gggaaatgtggtctttttggtgaaggtggtttgattatgtttgatgttagtaatgttgctgtgagttataatgttatggatattgttcctgttgctatta |
114 |
Q |
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| T |
10398070 |
gggaaatgtggccttttcggtgcaggcgggctgatcatgtttgatgttagcaatgttactgttaggtaccatgtgatggatatcctccctgttgcagtca |
10398169 |
T |
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| Q |
115 |
ttggaatcattggtggtgtcttgggaagcctttataactatcttcttcataagatccttagggtctataatctcatcaatcagtaag |
201 |
Q |
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| T |
10398170 |
ttggaatcataggtggattattgggaagcctttataatcatcttctacacaaggtcctcagactctacaatctaatcaatcagtaag |
10398256 |
T |
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