View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_high_19 (Length: 227)
Name: NF19285_high_19
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_high_19 |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 24506553 - 24506420
Alignment:
| Q |
93 |
ccctattaaaatcactgataaaattcacaaataccttgggatgcgaactcagtttggtagatctaaggagcaagattttaaattcatcatggataggata |
192 |
Q |
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| T |
24506553 |
ccctattaaaatcactgataaaattcacaa-taccttgggatgccaactcagtttgggagatctaaggagcaagattttaaattcatcatggataggata |
24506455 |
T |
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| Q |
193 |
tggaagaatctcaaaggttggaaggagaaaagtct |
227 |
Q |
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| T |
24506454 |
tggaagaatctcaaaggttggaaggagaaaagtct |
24506420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24506600 - 24506551
Alignment:
| Q |
1 |
gcctctggtcagaaagttaatttagacaaatctcaaatgattttcagccc |
50 |
Q |
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| T |
24506600 |
gcctctggtcagaaagttaatttagacaaatctgaaatgattttcagccc |
24506551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 23860297 - 23860164
Alignment:
| Q |
94 |
cctattaaaatcactgataaaattcacaaataccttgggatgcgaactcagtttggtagatctaaggagcaagattttaaattcatcatggataggatat |
193 |
Q |
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| T |
23860297 |
cctatcaaaatcaatgataacatcaacaaatatctgggcatgcctactcattttggcagatccaaggaacaagattttaacttcctcatggatagaattt |
23860198 |
T |
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| Q |
194 |
ggaagaatctcaaaggttggaaggagaaaagtct |
227 |
Q |
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| T |
23860197 |
ggaaaaagttgaagggctggaaagagaaaagtct |
23860164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 16428179 - 16428085
Alignment:
| Q |
94 |
cctattaaaatcactgataaaattcacaaataccttgggatgcgaactcagtttggtagatctaaggagcaagattttaaattcatcatggatag |
188 |
Q |
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| T |
16428179 |
cctattaaaatcaatgctaaaattcacaaatatctgggtatgcctacccactttggtagatctaaggaacaagacttaaatttcattatggatag |
16428085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 43248957 - 43249045
Alignment:
| Q |
127 |
cttgggatgcgaactcagtttggtagatctaaggagcaagattttaaattcatcatggataggatatggaagaatctcaaaggttggaa |
215 |
Q |
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| T |
43248957 |
cttgggatgcctactcaatttgggaggtcaaaggagcaagattttcacttcatcatggataagatatggaaaaagcttaaagggtggaa |
43249045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 41093493 - 41093388
Alignment:
| Q |
120 |
caaataccttgggatgcgaactcagtttggtagatctaaggagcaagattttaaattcatcatggataggatatggaagaatctcaaaggttggaaggag |
219 |
Q |
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| T |
41093493 |
caaataccttggtatgccaactcaatttcgaaggtcaaaggaacaagattttaattttattatggataggagtcagaaaaaacttaaaggttggaaggag |
41093394 |
T |
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| Q |
220 |
aaaagt |
225 |
Q |
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| T |
41093393 |
aaaagt |
41093388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 24005874 - 24005792
Alignment:
| Q |
145 |
tttggtagatctaaggagcaagattttaaattcatcatggataggatatggaagaatctcaaaggttggaaggagaaaagtct |
227 |
Q |
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| T |
24005874 |
tttggaagatctaaggagcaggactttaactttatcatggacagaatatggaaaaagttgaaaggttggaaagagaaatgtct |
24005792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 10727633 - 10727681
Alignment:
| Q |
139 |
actcagtttggtagatctaaggagcaagattttaaattcatcatggata |
187 |
Q |
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| T |
10727633 |
actcagtttgggagatcaaaggtgcaagatttcaatttcatcatggata |
10727681 |
T |
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