View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_high_5 (Length: 443)
Name: NF19285_high_5
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 31174831 - 31174418
Alignment:
| Q |
1 |
gatgtattgtggtgttgaccgtgttgtatccagcttatgtcagaactcagaacaaacaactatgaaacatcttagcatatttt-ccttcactgcacattt |
99 |
Q |
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| T |
31174831 |
gatgtattgtggtgttgaccgtgttgtatccagcttatgtcagaactcagaacaaacaactacgaaacatcttagcatttttttccttcactgcacattt |
31174732 |
T |
|
| Q |
100 |
actgcctttctttggaattggtttgaaaattgcttgaactttagtattgatatgacaaatattgacgggttaagttgttgctatagaaactagagcttac |
199 |
Q |
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| T |
31174731 |
gctgcctttctttggaattggtttgaaaattgcttgaactttagtattgatatgacaaatattgacgggttaagttgttgctatagaaactagagcttac |
31174632 |
T |
|
| Q |
200 |
aggtgcatgataaatagaaatagaatcaaatttcaaggcaatgattgcagttttgaaagtgatgtaaacctgataaatgctgaggttaagcatagtggta |
299 |
Q |
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| T |
31174631 |
aggtgcatgataaatagaaatagaatcaagtttcaaggcaatgattgcagttttgaaagtggtgtaaacctgataaatgctgaggttaagcatagtggta |
31174532 |
T |
|
| Q |
300 |
gcttgtctaaggggcaatgttaaattctaatggatgatttttaaagtcccgaagttcttcaacttaagcggaaaggccagaaatgctaacaacattgtag |
399 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31174531 |
gcttgtctaaggggcaattttaaattctaatggatgatttttaaagtcccgaagttcttcaacttaagcggaaaggccagaaatgctaacaacattgtag |
31174432 |
T |
|
| Q |
400 |
aggttttgtcgcaa |
413 |
Q |
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| T |
31174431 |
aggttttgtcgcaa |
31174418 |
T |
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