View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_high_9 (Length: 331)
Name: NF19285_high_9
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_high_9 |
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| [»] chr8 (5 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 38120534 - 38120855
Alignment:
| Q |
13 |
aaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagttggataatagtgtgaattaactaccacatcaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
38120534 |
aaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagttggataatagtgtgaattaactacaaattcaaag |
38120633 |
T |
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| Q |
113 |
tttcacatcatgagacaacgaagtgcagcacagactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttattaac |
212 |
Q |
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|||||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38120634 |
tttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaac |
38120733 |
T |
|
| Q |
213 |
tacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatct---tcatcatcatcgaagcatcgcactcacaggccatggtgatcttca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120734 |
tacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttca |
38120833 |
T |
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| Q |
310 |
atctcaaccattggcttgacct |
331 |
Q |
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|||||||||||||||||||||| |
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| T |
38120834 |
atctcaaccattggcttgacct |
38120855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 38609400 - 38609268
Alignment:
| Q |
199 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
298 |
Q |
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| T |
38609400 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38609301 |
T |
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| Q |
299 |
ggtgatcttcaatctcaaccattggcttgacct |
331 |
Q |
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| T |
38609300 |
ggtgatcttcaatctcaaccattggcttgacct |
38609268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 199 - 331
Target Start/End: Complemental strand, 38794183 - 38794051
Alignment:
| Q |
199 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38794183 |
gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat |
38794084 |
T |
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| Q |
299 |
ggtgatcttcaatctcaaccattggcttgacct |
331 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38794083 |
ggtgatcttcaatctcaaccattggcttgacct |
38794051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 34592957 - 34592867
Alignment:
| Q |
243 |
agaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacc |
330 |
Q |
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|||||||| | |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacc |
34592867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 38287498 - 38287457
Alignment:
| Q |
209 |
taactacaaatttcatagagattcacttcagcagagaaagaa |
250 |
Q |
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| T |
38287498 |
taactacaagtttcatagagtttcacttcagcagaaaaagaa |
38287457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 28730116 - 28730429
Alignment:
| Q |
13 |
aaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactaccacatcaa |
110 |
Q |
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||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| ||| | ||||||||||||||||||||||| | ||| |
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| T |
28730116 |
aaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaattaactacaaattcag |
28730208 |
T |
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| Q |
111 |
agtttcacatcatgagacaacgaagtgcagcacagactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttatta |
210 |
Q |
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|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||| |
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| T |
28730209 |
agtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttatta |
28730308 |
T |
|
| Q |
211 |
actacaaatttcatagagattcacttcagcagagaaagaactgaaccacaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaa |
310 |
Q |
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||||||||||||||| || || |||||||||||||||||| | || | |||||||| |||| ||| || |||| |||||||||||||||||||||||||| |
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| T |
28730309 |
actacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaa |
28730408 |
T |
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| Q |
311 |
tctcaaccattggcttgacct |
331 |
Q |
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|||||| ||||||| |||||| |
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| T |
28730409 |
tctcaaacattggcctgacct |
28730429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
240 |
cagagaaagaactgaaccacaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat |
311 |
Q |
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||||||||||| | |||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 33078588 - 33078556
Alignment:
| Q |
191 |
acaacagcgtaaacttattaactacaaatttca |
223 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
33078588 |
acaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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