View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_14 (Length: 282)
Name: NF19285_low_14
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5415014 - 5415278
Alignment:
| Q |
1 |
cttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacnnnnnnntttacttttgttggatattgaaaatagctggtagca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5415014 |
cttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacaaaaaaatttacttttgttggatattgaaaatagctggtagca |
5415113 |
T |
|
| Q |
101 |
gaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaattgcatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5415114 |
gaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaattgcatttg |
5415213 |
T |
|
| Q |
201 |
cttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaac |
265 |
Q |
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| T |
5415214 |
cttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaac |
5415278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 5388562 - 5388734
Alignment:
| Q |
93 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
192 |
Q |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5388562 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5388661 |
T |
|
| Q |
193 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaac |
265 |
Q |
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|| ||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
5388662 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaac |
5388734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 5402371 - 5402543
Alignment:
| Q |
93 |
tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
192 |
Q |
| |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5402371 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
5402470 |
T |
|
| Q |
193 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaac |
265 |
Q |
| |
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|| ||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
5402471 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaac |
5402543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 5396660 - 5396842
Alignment:
| Q |
82 |
ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca |
181 |
Q |
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|
||||| |||| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||| | ||||| |||||||||||| | || || ||| |
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| T |
5396660 |
ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgaca |
5396759 |
T |
|
| Q |
182 |
cttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaa |
264 |
Q |
| |
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|
| T |
5396760 |
cttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttcaa |
5396842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 5408112 - 5407992
Alignment:
| Q |
88 |
atagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcct |
187 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | | ||||||||||||| |||| | |||| | ||||| |||||||||||| | || || ||||||||| |
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| T |
5408112 |
atagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcct |
5408013 |
T |
|
| Q |
188 |
ggaattgcatttgcttgggga |
208 |
Q |
| |
|
||||||||| ||| ||||||| |
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| T |
5408012 |
ggaattgcaattgtttgggga |
5407992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 5398805 - 5398834
Alignment:
| Q |
224 |
ttgatttactctgttggtcacatttctggt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5398805 |
ttgatttactctgttggtcacatttctggt |
5398834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 5398750 - 5398798
Alignment:
| Q |
160 |
taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga |
208 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||| | |||||| |
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| T |
5398750 |
taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga |
5398798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 36267625 - 36267728
Alignment:
| Q |
161 |
aacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatt |
260 |
Q |
| |
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|||||||| |||| |||||||||||||||||| || ||| ||||||| | |||| ||||| || |||||||| |||||||||| ||||||||||||| |
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| T |
36267625 |
aacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatt |
36267724 |
T |
|
| Q |
261 |
tcaa |
264 |
Q |
| |
|
|||| |
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| T |
36267725 |
tcaa |
36267728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 36262476 - 36262567
Alignment:
| Q |
173 |
gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaa |
264 |
Q |
| |
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|||||||||||||| || |||||| ||| ||||||| | ||| | |||| |||||||||||| ||||||| || ||||||||||||||||| |
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| T |
36262476 |
gtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttcaa |
36262567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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