View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_17 (Length: 247)
Name: NF19285_low_17
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8350355 - 8350595
Alignment:
| Q |
1 |
tcaagagaaaagagaacgccgccaaccggagctcggaaagccgcgcaaacccccgatgaagctccacatgtgattagatcgcgacggtcgcgatcgttgt |
100 |
Q |
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| T |
8350355 |
tcaagagaaaagagaacgccgccaaccggagctcggaaagccgcgcaaacccccgacgaagctccacatgtgattagatcgcgacggtcgcgatcgttgt |
8350454 |
T |
|
| Q |
101 |
tgaagtatcttacccatttccatttgattctatgattgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttc |
200 |
Q |
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| T |
8350455 |
tgaagtatcttacccatttccatttgattctatgattgtctggacctccttggcctagtaaggaagcaatgcagcttcctatgtgtactaatggaccttc |
8350554 |
T |
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| Q |
201 |
ttttcctaagtctagacctgctgaaacagctcctatgcttc |
241 |
Q |
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| T |
8350555 |
ttttcctaagtctagacctgctgaaacagctcctatgcttc |
8350595 |
T |
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Back To:
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 10397891 - 10397726
Alignment:
| Q |
76 |
agatcgcgacggtcgcgatcgttgttgaagtatcttacccatttccatttgattctatgattgtctggacctccttggcctagtaaggaagcaatgcagc |
175 |
Q |
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||||| |||||||| ||||| |||||||| |||| | ||| |||||||| | | | |||||| || ||||||||||||||||||||||| ||||| | |
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| T |
10397891 |
agatcccgacggtcacgatcattgttgaaatatcgcagccagcgccatttgactttgtaattgtcagggcctccttggcctagtaaggaagctatgcaac |
10397792 |
T |
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| Q |
176 |
ttcctatgtgtactaatggaccttcttttcctaagtctagacctgctgaaacagctcctatgcttc |
241 |
Q |
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||||||| ||||| || || ||||||||||| | ||||| ||||| || |||||||| ||||||| |
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| T |
10397791 |
ttcctatatgtaccaagggtccttcttttccaagatctaggcctgcagagacagctccaatgcttc |
10397726 |
T |
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