View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19285_low_18 (Length: 244)

Name: NF19285_low_18
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19285_low_18
NF19285_low_18
[»] chr8 (1 HSPs)
chr8 (18-241)||(6473244-6473467)
[»] chr6 (7 HSPs)
chr6 (29-235)||(13608190-13608398)
chr6 (99-172)||(33361317-33361390)
chr6 (99-162)||(33412747-33412810)
chr6 (105-172)||(12782319-12782386)
chr6 (99-162)||(12785768-12785831)
chr6 (99-162)||(33060384-33060447)
chr6 (99-162)||(33390902-33390965)
[»] chr4 (8 HSPs)
chr4 (46-244)||(31244188-31244386)
chr4 (99-162)||(31496144-31496207)
chr4 (99-203)||(31160061-31160165)
chr4 (95-166)||(31482036-31482107)
chr4 (99-162)||(31501314-31501377)
chr4 (99-172)||(31020690-31020763)
chr4 (99-172)||(31030571-31030644)
chr4 (99-152)||(31476204-31476257)
[»] chr5 (1 HSPs)
chr5 (28-80)||(17599893-17599945)
[»] chr2 (1 HSPs)
chr2 (99-162)||(17437877-17437940)
[»] chr7 (1 HSPs)
chr7 (28-80)||(14723905-14723957)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 6473467 - 6473244
Alignment:
Q  18 agttttgggcctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagct 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473467 agttttgggcctttggctttaacaatttgaatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagct 6473368  T
Q  118 ttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacgtcagaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||    
T  6473367 ttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacctaaaaaa 6473268  T
Q  218 agggggaaatatatcatctgagct 241  Q
    ||||||||| ||||||||||||||    
T  6473267 agggggaaacatatcatctgagct 6473244  T

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Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 13608190 - 13608398
Alignment:
Q  29 tttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttcaaataggagga---aatggaaatatgatgtgtttgtgagctttcgaggc 125  Q
    ||||||||| |||||||||||| || ||||||||||||||| ||||||||||  ||||||||   |||||||||||||||||||||||||||| || |||    
T  13608190 tttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggc 13608289  T
Q  126 gaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacgtcagaaaagggggaa 225  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||  ||||| ||||||| |||| | | |||||||| |     
T  13608290 gaagacacgcgcaacaatttcactgatcatctttttggcgctc-tcataaaaatgacattgttgcattcagagatgatacaaacctaaaaaaaggggaac 13608388  T
Q  226 atatatcatc 235  Q
    ||||||||||    
T  13608389 atatatcatc 13608398  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 33361390 - 33361317
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 172  Q
    |||||||||||||| | |||| |||| |||||||| ||||||||||||||||||  |||||||| ||| |||||    
T  33361390 tatgatgtgtttgtcatctttagaggtgaagacactcgcaacaatttcactgattttctttttgatgcccttca 33361317  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 33412810 - 33412747
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    |||||||||||||| | |||  |||| |||||||| |||||||||||||||||| |||||||||    
T  33412810 tatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttg 33412747  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 12782386 - 12782319
Alignment:
Q  105 gtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 172  Q
    ||||||||||||||  |||||  |||||| ||   ||||||||||||||||||||||||||| |||||    
T  12782386 gtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttca 12782319  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 12785831 - 12785768
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    ||||| ||||||||||||||| |||||  |||||| |||  ||||||||| |||||||||||||    
T  12785831 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccgatcatctttttg 12785768  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 33060447 - 33060384
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  33060447 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 33060384  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 33390965 - 33390902
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    |||||||||||||| | ||| ||||| |||||||| ||||||||||||| ||||  ||||||||    
T  33390965 tatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttg 33390902  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 46 - 244
Target Start/End: Original strand, 31244188 - 31244386
Alignment:
Q  46 caatgactcgtagtagcatccaaagtgtctcttcaaataggaggaaatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaattt 145  Q
    ||||| || ||| |||||||| |||| ||||||||  || || ||||||||||||||||||||||||||||||| |||| |  ||||| |||||||||||    
T  31244188 caatggcttgtaatagcatccgaagtatctcttcacctaagatgaaatggaaatatgatgtgtttgtgagctttagaggtggcgacacacgcaacaattt 31244287  T
Q  146 cactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacgtcagaaaagggggaaatatatcatctgagcttct 244  Q
    ||||||||| ||||||||  |||| ||||||||  ||||||||  |||||||||||||| |||  |||  ||||||| |||||||||||||||||||||    
T  31244288 cactgatcacctttttggcactctccataaaaaaggcattgttaccttcagggatgatacaaagctcaagaaaggggaaaatatatcatctgagcttct 31244386  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 31496144 - 31496207
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    ||||| |||||||| | |||| |||| || ||||| ||||||||||||||||||||||||||||    
T  31496144 tatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttg 31496207  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 31160165 - 31160061
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaatcgcattgttgtcttcaggg 198  Q
    ||||| || |||||||||||| ||||| ||||||| | |||||||||  | ||||||||||||| ||| ||||| | |||  |||| ||||  |||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  199 atgat 203  Q
    |||||    
T  31160065 atgat 31160061  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 31482036 - 31482107
Alignment:
Q  95 gaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgc 166  Q
    ||||||||| ||||||||||| ||  | || || ||||| || ||||| |||||||||||||||||||||||    
T  31482036 gaaatatgacgtgtttgtgagtttctgtggtgatgacacacgtaacaaattcactgatcatctttttggtgc 31482107  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 31501314 - 31501377
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    ||||||| |||||| |  ||| |||| |||||||| ||||||||||||||| ||||||||||||    
T  31501314 tatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttg 31501377  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 31020763 - 31020690
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 172  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31020763 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31020690  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 31030644 - 31030571
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttca 172  Q
    |||||||||||||| | |||| |||||||||| || |||  ||| |||| |||||||||||||| ||| |||||    
T  31030644 tatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttca 31030571  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 31476204 - 31476257
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgat 152  Q
    ||||| ||||||||||||||  |||| ||||| || ||||||||||||||||||    
T  31476204 tatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgat 31476257  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17599945 - 17599893
Alignment:
Q  28 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 80  Q
    |||||||||| | ||| |||||| || ||||||||||||||||||||||||||    
T  17599945 ctttggcttttataatatcaatggctagtagtagcatccaaagtgtctcttca 17599893  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 17437877 - 17437940
Alignment:
Q  99 tatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttg 162  Q
    |||||||||||||| | |||| |||| ||||| || ||||||||||||||||||  ||||||||    
T  17437877 tatgatgtgtttgtcacctttagaggtgaagatactcgcaacaatttcactgattttctttttg 17437940  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 14723905 - 14723957
Alignment:
Q  28 ctttggctttaacaatttcaatgactcgtagtagcatccaaagtgtctcttca 80  Q
    |||||||||| | ||| |||||| ||  |||||||||||||||||||||||||    
T  14723905 ctttggcttttataatatcaatggctaatagtagcatccaaagtgtctcttca 14723957  T

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