View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19285_low_2 (Length: 676)

Name: NF19285_low_2
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19285_low_2
NF19285_low_2
[»] chr6 (10 HSPs)
chr6 (266-665)||(8816891-8817276)
chr6 (15-219)||(8816647-8816851)
chr6 (15-219)||(8620458-8620662)
chr6 (15-219)||(8817663-8817867)
chr6 (101-209)||(8420726-8420830)
chr6 (266-436)||(8420536-8420704)
chr6 (481-547)||(8420325-8420391)
chr6 (587-665)||(8419870-8419948)
chr6 (441-480)||(8596715-8596754)
chr6 (481-513)||(4247238-4247270)
[»] chr1 (1 HSPs)
chr1 (481-516)||(16322726-16322761)
[»] chr5 (2 HSPs)
chr5 (518-547)||(3951530-3951559)
chr5 (481-513)||(17777700-17777732)
[»] chr4 (2 HSPs)
chr4 (518-547)||(8469505-8469534)
chr4 (481-513)||(21043368-21043400)
[»] chr3 (1 HSPs)
chr3 (481-513)||(37308219-37308251)
[»] chr2 (1 HSPs)
chr2 (519-547)||(28803634-28803662)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 266 - 665
Target Start/End: Original strand, 8816891 - 8817276
Alignment:
Q  266 ttccatcattccaacagcattaaattatccaataactattctagacctcgcaaaactcttagcaaattctaatcagattgcattacctaaatatttaata 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8816891 ttccatcattccaacagcattaaattatccaataactattctagacctcgcaaagctcttagcaaattctaatcagattgcattacctaaatatttaata 8816990  T
Q  366 tccaggttcaaattcnnnnnnnn-ttatatagcaaattaaaacagaatacagatacatcatgttccattgttccaagttccaacaaccacgacttatcca 464  Q
    | ||||||||||||          ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  8816991 tacaggttcaaattaaaaaaaaaattatatagcaaattaaaacagaatacagatacaccatgttccatttttccaagttccaacaaccacgacttatcca 8817090  T
Q  465 acaactactctcaaaattgggtaaacaacttaattaagtgcttatagcacaaaagcataaatgcttatcatataagtgcttatcaaactctataacaaca 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||| |||    
T  8817091 acaactactctcaaaattgggtaaacaacttaattaagtgcttatagcacaaaagcataaa---------------tgcttatcaaactctataacgaca 8817175  T
Q  565 aaaatctaaccacattgcattatatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttca 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8817176 aaaatctaaccacattgcattatatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttca 8817275  T

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Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 8816647 - 8816851
Alignment:
Q  15 caacaattaccatcaaaccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgcgactttcaaaactagcattaagcatgcagcaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8816647 caacaattaccatcaaaccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgcgactttgaaaactagcattaagcatgcagcaga 8816746  T
Q  115 tagcataaaatagtaaaactctctatggtttcacctctctcatagaaccaaaacacaccatttcttatttttgacaacaattcgagttctaatcaatttc 214  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8816747 tagcataaaatagtaaaactctctacggtttcacctctctcatagaaccataacacaccatttcttatttttgacaacaagtcgagttctaatcaatttc 8816846  T
Q  215 taaat 219  Q
    |||||    
T  8816847 taaat 8816851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 8620662 - 8620458
Alignment:
Q  15 caacaattaccatcaaaccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgcgactttcaaaactagcattaagcatgcagcaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8620662 caacaattaccatcaaaccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgcgactctcaaaactagcattaagcatgcagcaga 8620563  T
Q  115 tagcataaaatagtaaaactctctatggtttcacctctctcatagaaccaaaacacaccatttcttatttttgacaacaattcgagttctaatcaatttc 214  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  8620562 tagcataaaatagtaaaactctctttggtttcacctctctaatagaaccaaaacacaccatttcttacttttgactacaagtcgagttctaatcaatttc 8620463  T
Q  215 taaat 219  Q
    |||||    
T  8620462 taaat 8620458  T

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Target: chr6; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 8817663 - 8817867
Alignment:
Q  15 caacaattaccatcaaaccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgcgactttcaaaactagcattaagcatgcagcaga 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||    
T  8817663 caacaattaccatcaagccctagcaaacaacaattgaagaagaaaaagaaacaaaccaaaacattgtgactctcaaaaccagcattaggcatgcagcaga 8817762  T
Q  115 tagcataaaatagtaaaactctctatggtttcacctctctcatagaaccaaaacacaccatttcttatttttgacaacaattcgagttctaatcaatttc 214  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  8817763 tagcataaaatagtaaaactctctttggtttcacctctctaatagaaccaaaacacaccatttcttacttttgacaacaagtcgagttctaatcaatttc 8817862  T
Q  215 taaat 219  Q
    |||||    
T  8817863 taaat 8817867  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 8420830 - 8420726
Alignment:
Q  101 aagcatgcagcagatagcataaaatagtaaaactctctatggtttcacctctctcatagaaccaaaacacaccatttcttatttttgacaacaattcgag 200  Q
    ||||||||||||||||| ||||||||||||||||||    |||  ||||||||| ||||||||||||||||||| |||||| |||||||||||| | |||    
T  8420830 aagcatgcagcagatagaataaaatagtaaaactct----ggtgccacctctctaatagaaccaaaacacaccacttcttacttttgacaacaagttgag 8420735  T
Q  201 ttctaatca 209  Q
    |||||||||    
T  8420734 ttctaatca 8420726  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 266 - 436
Target Start/End: Complemental strand, 8420704 - 8420536
Alignment:
Q  266 ttccatcattccaacagcattaaattatccaataactattctagacctc-gcaaaactcttagcaaattctaatcagattgcattacctaaatatttaat 364  Q
    |||||||| ||||||||| || | |||||||||||||||| |||||||| ||||||| |||  |||||||||| |||||||||||||  |||||||| ||    
T  8420704 ttccatcagtccaacagccttgacttatccaataactattatagacctcggcaaaacacttgtcaaattctaaccagattgcattactcaaatattt-at 8420606  T
Q  365 atccaggttcaaattcnnnnnnnnttatatagcaaattaaaacagaatacagatacatcatgttccattgtt 436  Q
    ||  ||||||  ||||         ||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  8420605 atataggttcttattcaaaaaag--tatatagcaaactaaaacataatacagagacatcatgttccattgtt 8420536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 8420391 - 8420325
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagcacaaaagcataaatgcttatcatataagtgcttat 547  Q
    ||||||||||| ||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  8420391 ttgggtaaacagcttaattaaatgcttatagcataaaggcatatatgcttatcatataagtgcttat 8420325  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 665
Target Start/End: Complemental strand, 8419948 - 8419870
Alignment:
Q  587 tatcataaaattcaacaacaattcaattccaaaagttcaattctcttccaaaaagttatacatagcactgacacttcat 665  Q
    ||||||||||||||| |||||||  || | |||||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  8419948 tatcataaaattcaaaaacaatttcatccaaaaagtacaattctcttctgaaaagctatatatagcactgacacttcat 8419870  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 480
Target Start/End: Complemental strand, 8596754 - 8596715
Alignment:
Q  441 gttccaacaaccacgacttatccaacaactactctcaaaa 480  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8596754 gttccaacaaccatgacttatccaacaactactctcaaaa 8596715  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 513
Target Start/End: Complemental strand, 4247270 - 4247238
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagca 513  Q
    |||| ||||||||||||||||||||||||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagca 4247238  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 516
Target Start/End: Original strand, 16322726 - 16322761
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagcacaa 516  Q
    |||| |||||||||||||||||||||||||||||||    
T  16322726 ttggataaacaacttaattaagtgcttatagcacaa 16322761  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Original strand, 3951530 - 3951559
Alignment:
Q  518 agcataaatgcttatcatataagtgcttat 547  Q
    ||||||||||||||||||||||||||||||    
T  3951530 agcataaatgcttatcatataagtgcttat 3951559  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 513
Target Start/End: Original strand, 17777700 - 17777732
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagca 513  Q
    |||||||||||||||||||||||| ||||||||    
T  17777700 ttgggtaaacaacttaattaagtgtttatagca 17777732  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Complemental strand, 8469534 - 8469505
Alignment:
Q  518 agcataaatgcttatcatataagtgcttat 547  Q
    ||||||||||||||||||||||||||||||    
T  8469534 agcataaatgcttatcatataagtgcttat 8469505  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 513
Target Start/End: Complemental strand, 21043400 - 21043368
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagca 513  Q
    |||||||||||||||||| ||||||||||||||    
T  21043400 ttgggtaaacaacttaatgaagtgcttatagca 21043368  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 481 - 513
Target Start/End: Complemental strand, 37308251 - 37308219
Alignment:
Q  481 ttgggtaaacaacttaattaagtgcttatagca 513  Q
    |||| ||||||||||||||||||||||||||||    
T  37308251 ttggataaacaacttaattaagtgcttatagca 37308219  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 519 - 547
Target Start/End: Complemental strand, 28803662 - 28803634
Alignment:
Q  519 gcataaatgcttatcatataagtgcttat 547  Q
    |||||||||||||||||||||||||||||    
T  28803662 gcataaatgcttatcatataagtgcttat 28803634  T

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