View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_22 (Length: 219)
Name: NF19285_low_22
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 6897504 - 6897320
Alignment:
| Q |
18 |
atgaatggcatgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacat |
117 |
Q |
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| T |
6897504 |
atgaatggcatgaccactgctctcacacacaaccagaagtatgtagctgtttattccacttccacaaagctcatgcatggtccaattgtaggctcgacat |
6897405 |
T |
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| Q |
118 |
ttggatgtgtagacgctgcgacttgttgtgcttgtgatcttctctttgttattcttgtgactttgtatcccttttttggggtctc |
202 |
Q |
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| T |
6897404 |
ttggatgtgtagacgctgcgacttgttgtgcttgtaatcttctctatgttattcttgtgactttgtatcccttttttggggtctc |
6897320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 6879932 - 6879784
Alignment:
| Q |
18 |
atgaatggcatgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacat |
117 |
Q |
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| T |
6879932 |
atgaatggcatgaccactgctcttacacacaactagaagtatgtagctgtttattccacttccacaaagctcatgcatggtccaattgtaggctcgtcat |
6879833 |
T |
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| Q |
118 |
ttggatgtgtagacgctgcgacttgttgtgcttgtgatcttctctttgt |
166 |
Q |
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| T |
6879832 |
ttggatgtgtagacactgcgacttgttgtgcttgtaatcttctctttgt |
6879784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 6166314 - 6166184
Alignment:
| Q |
18 |
atgaatggcatgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacat |
117 |
Q |
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| T |
6166314 |
atgaatggcatgaccaccgctctcacacacaaccagaaatatgtagctgtttattccacttccagaaagctcatgcatggtccaattttaggctccacat |
6166215 |
T |
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| Q |
118 |
ttggatgtgtagacgctgcgacttgttgtgc |
148 |
Q |
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| T |
6166214 |
ttggatgtgtcgatgctgtggcttgttgtgc |
6166184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 6235446 - 6235326
Alignment:
| Q |
28 |
tgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgt |
127 |
Q |
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| T |
6235446 |
tgaccactgctctcacacacaaccagaagtatgtagctgtttattccacttccacaaaactcatgcatggtccaattgtaggctccacatttgaatgtgt |
6235347 |
T |
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| Q |
128 |
agacgctgcgacttgttgtgc |
148 |
Q |
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| T |
6235346 |
cgacgctgcggctagttgtgc |
6235326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 6242736 - 6242608
Alignment:
| Q |
20 |
gaatggcatgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacattt |
119 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
6242736 |
gaatggcatgaccactgctctcacacacaaccaaaagtatgttgctgtttattttacttccacaaagctcatgcatggtctaattgtaggctccgcattt |
6242637 |
T |
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| Q |
120 |
ggatgtgtagacgctgcgacttgttgtgc |
148 |
Q |
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| T |
6242636 |
ggatgtgtcgacgctgcgacttgttgtgc |
6242608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 6256635 - 6256523
Alignment:
| Q |
21 |
aatggcatgaccactgctctcacacacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttg |
120 |
Q |
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|||||||||||||| ||||||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
6256635 |
aatggcatgaccaccgctctcatgcacaaccagaaggatgtcgctgtttgttccacttccacaaagctcatgcatggtccaattgtaggccccgcatttg |
6256536 |
T |
|
| Q |
121 |
gatgtgtagacgc |
133 |
Q |
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||| ||| ||||| |
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| T |
6256535 |
gatatgttgacgc |
6256523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 6166148 - 6166099
Alignment:
| Q |
154 |
atcttctctttgttattcttgtgactttgtatcccttttttggggtctct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6166148 |
atcttctctttgttattcttgtgactttgtatcccttttttggggtctct |
6166099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 6242572 - 6242523
Alignment:
| Q |
154 |
atcttctctttgttattcttgtgactttgtatcccttttttggggtctct |
203 |
Q |
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| T |
6242572 |
atcttctctttgttattcttgtgactttgtatccctttttcggggtctct |
6242523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 6263126 - 6263019
Alignment:
| Q |
45 |
cacaactagaagtatgtagctgtttattccacttccataaagctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgtt |
144 |
Q |
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| T |
6263126 |
cacaaccagaaggatgtggctgtttgttccacttccacaaagttgatgcatggtccagttgcaggccccacgtttggatgtgtggacgcggagacttgtt |
6263027 |
T |
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| Q |
145 |
gtgcttgt |
152 |
Q |
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| T |
6263026 |
gcgcttgt |
6263019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 6594110 - 6594154
Alignment:
| Q |
159 |
ctctttgttattcttgtgactttgtatcccttttttggggtctct |
203 |
Q |
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| T |
6594110 |
ctctttgttattcctgtgactttgtatccctttttttgggtctct |
6594154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 6256475 - 6256436
Alignment:
| Q |
154 |
atcttctctttgttattcttgtgactttgtatcccttttt |
193 |
Q |
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| T |
6256475 |
atcttctctttgttattcttgtgattttgtatcccttttt |
6256436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 6235290 - 6235241
Alignment:
| Q |
154 |
atcttctctttgttattcttgtgactttgtatcccttttttggggtctct |
203 |
Q |
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| T |
6235290 |
atcttctctttcttattcttgtgactttgtattgctttttcggggtctct |
6235241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 6724727 - 6724794
Alignment:
| Q |
85 |
agctcatgcatggtccaattgtaggctcgacatttggatgtgtagacgctgcgacttgttgtgcttgt |
152 |
Q |
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| T |
6724727 |
agctcaagtatggtgcaattgtatgccccacatttggatgtgtacacgctgcggtttgttgtgcttgt |
6724794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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