View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_3 (Length: 501)
Name: NF19285_low_3
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 5 - 493
Target Start/End: Original strand, 52725782 - 52726270
Alignment:
| Q |
5 |
ctttgttagaaaatcaatcatatacggtcggccattgataaagcatggcacatacacatatggtttattgcttctatcttgctggtcgtttcaaacacaa |
104 |
Q |
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| T |
52725782 |
ctttgttagaaaatcaatcacatacggtcggccattgataaagcatggcacatacacatatggtttattgcttctatcttgctggtcgtttcaaacacaa |
52725881 |
T |
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| Q |
105 |
ttagctatagttagttttgtactttttgtgcttgagattcatgcacctgattaagtaaatgtcgttaaacatgtgcaatgatgagaaattagagatattg |
204 |
Q |
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| T |
52725882 |
ttagctatagttagttttgtactttttgtgcttgagattcatgcacctgattaagtaaatgtcgttaaacatgtgcaatgatgagaaattagagatattg |
52725981 |
T |
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| Q |
205 |
attgaatccaaccgaaatgatgatgatgataccctttaagagtgacaatcaaaatcttcatgcttggcccgccttgaaacaacttaaagtttcacgtctt |
304 |
Q |
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| T |
52725982 |
attgaatccaaccgaaatgatgatgatgataccctttgagagtgacaatcaaaatcttcatgcttggcccgccttgaaacaacttaaagtttcacgtctt |
52726081 |
T |
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| Q |
305 |
agaaattatatgtgtgggtctctgttagtgtttccatttccatctaaataatacttgttctttttatctaagatttagtgcatcccaaaactttcggtca |
404 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52726082 |
agaaatcatatgtgtgggtctctgttagtgtttccatttccatctaaatgatacttgttctttttatctaagatttagtgcatctcaaaactttcggtca |
52726181 |
T |
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| Q |
405 |
attgatttgcaagggcaagttattaggaacttcaacaaataatatataattctccaattcgtaagtaatagtttcttaatacctttgct |
493 |
Q |
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| T |
52726182 |
attgatttacaagggcaagttattaggaacttcaacaaataatatataattctccaattcgtaagtaatagtttcttaatacctttgct |
52726270 |
T |
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