View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_7 (Length: 416)
Name: NF19285_low_7
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 20675545 - 20675927
Alignment:
| Q |
21 |
ctttcattaaactcattcatcttttgttttaagtagcatttatgtacctgctcttgtattagctttcccaagtcaatctcatattcttgtgatgataact |
120 |
Q |
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|||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20675545 |
ctttcattcaactcattcatcatttcttttaagtagcatttatgtacttgctcttgtattacctttcccaagtcaatctcatattcttgtgatgataact |
20675644 |
T |
|
| Q |
121 |
tcttccttggaagtgtttccttttcatgaatagctttttggttgaaaagagattcaacttgtttctcattcctttttataagattatccaatttctcaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20675645 |
tcttccttggaagtgtttccttttcatgaatagctttttggttgaaaagagattcaccttgtttctcattcctttttataagattatccaatttctcaat |
20675744 |
T |
|
| Q |
221 |
agcaatttggatattttcttgtatgatgcttagttcctttcttttcttggacgatgacgcctttttctcttgcaatattcgatgcttaatccgactcaat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
20675745 |
tgcaatttggatattttcttgtatgatgcttagttcctttcttttcttggacgatgacgcctttttctcttgtaatattcgattcttaatccgattcaat |
20675844 |
T |
|
| Q |
321 |
tcttcgttcttttgttgaataatagattcatgattttttatcatcttagcaactaagcttccattttcattctcttcctcttc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20675845 |
tcttcgttcttttgttgaataatagattcatgatttttgatcatcttagcaactaagcttctattttcattctcttcctcttc |
20675927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 20675176 - 20675276
Alignment:
| Q |
21 |
ctttcattaaactcattcatcttttgttttaagtagcatttatgtacctgctcttgtattagctttcccaagtcaatctcatattcttgtgatgataact |
120 |
Q |
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|
|||||| | |||||||||||| ||| ||||||||| | ||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20675176 |
ctttcactcaactcattcatcatttcttttaagtaacctttttgtacatgctcttgcattagcttctccaagtcaatctcatattcttgtgatgataact |
20675275 |
T |
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| Q |
121 |
t |
121 |
Q |
| |
|
| |
|
|
| T |
20675276 |
t |
20675276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 19726863 - 19726973
Alignment:
| Q |
21 |
ctttcattaaactcattcatcttttgttttaagtagcatttatgtacctgctcttgtattagctttcccaagtcaatctcatattcttg---tgatgata |
117 |
Q |
| |
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|||||||| ||||||| |||| ||| ||| |||||| || |||| | ||||||||||||||| || | | |||||||||||||| ||| |||||||| |
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| T |
19726863 |
ctttcattcaactcatccatcgtttctttcaagtagaatatatgcatatgctcttgtattagcatttcaatgtcaatctcatattgttgtgatgatgata |
19726962 |
T |
|
| Q |
118 |
acttcttcctt |
128 |
Q |
| |
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||||||||||| |
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|
| T |
19726963 |
acttcttcctt |
19726973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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