View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19285_low_9 (Length: 347)
Name: NF19285_low_9
Description: NF19285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19285_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 35617434 - 35617107
Alignment:
| Q |
1 |
caacggtatgaggtaaggccaaacagaagtggataccaagttactataaagtataaacctattggaaatccatatttgacataagcaattggttttgaag |
100 |
Q |
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| T |
35617434 |
caacggtatgaggtaaggccaaacagaagtggataccaagttactataaagtataaacctattggaaatccatatttgacataagcaattggttttgaag |
35617335 |
T |
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| Q |
101 |
atgacttatcctttttattgctaaaaagtataaaatgtgcaggctgcctctacactatatggtcctcacacattatcagcgtacatccaagaattcaaca |
200 |
Q |
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| T |
35617334 |
gtgacttatcctttttattgctaaaaagtataaaatgtgcaggctgcctctacactatatggtcctcacacattatcagcgtacatccaagaattcaaca |
35617235 |
T |
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| Q |
201 |
aactagcacaagcaatggctaaaggcgataaaatatatggaaatggtacttccccaccagatcttttatctgtacaaaaaagcttcttacttgatccctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35617234 |
aactagcacaagcaatggctaaaggcgataaaatctatggaaatggtacttccccaccagatcttttatctgtacaaaaaagcttcttacttgatccctt |
35617135 |
T |
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| Q |
301 |
tggagacacaactcctgacggaattaaa |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35617134 |
tggagacacaactcctgacggaattaaa |
35617107 |
T |
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