View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19286_high_13 (Length: 321)

Name: NF19286_high_13
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19286_high_13
NF19286_high_13
[»] chr7 (24 HSPs)
chr7 (1-313)||(18873169-18873468)
chr7 (1-273)||(15167984-15168242)
chr7 (1-256)||(10895795-10896037)
chr7 (9-264)||(14422802-14423043)
chr7 (1-265)||(12709839-12710090)
chr7 (1-265)||(13122910-13123161)
chr7 (9-260)||(16009395-16009631)
chr7 (112-265)||(13743616-13743768)
chr7 (147-265)||(12590639-12590756)
chr7 (147-265)||(13007374-13007491)
chr7 (151-258)||(16677239-16677348)
chr7 (151-258)||(17651475-17651584)
chr7 (205-260)||(11382871-11382926)
chr7 (205-260)||(11389348-11389403)
chr7 (205-261)||(20311051-20311107)
chr7 (205-261)||(21230959-21231015)
chr7 (197-260)||(13679485-13679548)
chr7 (8-91)||(13743526-13743608)
chr7 (206-261)||(2971254-2971309)
chr7 (206-261)||(20906461-20906516)
chr7 (206-260)||(11311059-11311113)
chr7 (225-265)||(831629-831669)
chr7 (225-265)||(1196809-1196849)
chr7 (225-265)||(34958578-34958618)
[»] chr5 (12 HSPs)
chr5 (1-313)||(22750950-22751249)
chr5 (9-265)||(38144532-38144773)
chr5 (9-260)||(19512204-19512441)
chr5 (9-260)||(28370055-28370291)
chr5 (147-270)||(23528573-23528695)
chr5 (196-260)||(18407944-18408008)
chr5 (205-261)||(22438747-22438803)
chr5 (196-260)||(23111200-23111264)
chr5 (206-261)||(19236900-19236955)
chr5 (208-261)||(22461158-22461211)
chr5 (208-261)||(22467782-22467835)
chr5 (146-261)||(34830024-34830139)
[»] chr3 (22 HSPs)
chr3 (1-273)||(14762746-14763004)
chr3 (1-258)||(38310802-38311046)
chr3 (15-258)||(20247791-20248021)
chr3 (8-258)||(24192771-24193009)
chr3 (9-260)||(9534146-9534382)
chr3 (9-261)||(23370505-23370743)
chr3 (147-261)||(24933828-24933941)
chr3 (147-265)||(41455093-41455210)
chr3 (121-265)||(16801463-16801606)
chr3 (119-258)||(55499104-55499244)
chr3 (199-260)||(18929239-18929300)
chr3 (196-260)||(17240513-17240577)
chr3 (12-92)||(55499258-55499337)
chr3 (206-261)||(13302240-13302295)
chr3 (206-261)||(13323787-13323842)
chr3 (147-261)||(10389443-10389557)
chr3 (147-261)||(10414532-10414646)
chr3 (147-261)||(10421202-10421316)
chr3 (206-261)||(12033444-12033499)
chr3 (206-261)||(13312896-13312951)
chr3 (206-261)||(17131732-17131787)
chr3 (206-261)||(51301589-51301644)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-265)||(11846-12097)
scaffold0026 (9-261)||(111504-111741)
[»] chr6 (23 HSPs)
chr6 (14-273)||(23057760-23058005)
chr6 (1-265)||(29614142-29614393)
chr6 (9-260)||(23839016-23839253)
chr6 (9-261)||(10986180-10986418)
chr6 (12-260)||(4477678-4477912)
chr6 (9-265)||(18800255-18800497)
chr6 (126-265)||(930091-930229)
chr6 (147-265)||(12168305-12168422)
chr6 (147-265)||(19287214-19287331)
chr6 (147-265)||(19785865-19785982)
chr6 (147-265)||(19878398-19878515)
chr6 (147-265)||(19884174-19884291)
chr6 (147-261)||(34639986-34640100)
chr6 (147-261)||(34646660-34646774)
chr6 (9-258)||(21565214-21565449)
chr6 (147-261)||(25469704-25469816)
chr6 (205-261)||(24512843-24512899)
chr6 (208-260)||(9187498-9187550)
chr6 (204-260)||(25348486-25348542)
chr6 (177-261)||(31252394-31252478)
chr6 (204-258)||(25598643-25598697)
chr6 (204-260)||(25397172-25397228)
chr6 (204-260)||(19471335-19471391)
[»] scaffold1773 (1 HSPs)
scaffold1773 (1-265)||(988-1237)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-265)||(49989-50238)
[»] scaffold0029 (1 HSPs)
scaffold0029 (37-265)||(111726-111942)
[»] chr4 (12 HSPs)
chr4 (1-265)||(8045828-8046078)
chr4 (1-265)||(11847916-11848173)
chr4 (147-261)||(53483646-53483760)
chr4 (205-261)||(15408139-15408195)
chr4 (204-260)||(8834895-8834951)
chr4 (204-260)||(13888641-13888697)
chr4 (177-258)||(14486632-14486713)
chr4 (204-260)||(15245215-15245271)
chr4 (146-261)||(27906205-27906321)
chr4 (204-251)||(22724695-22724742)
chr4 (204-260)||(15308120-15308176)
chr4 (225-265)||(15747552-15747592)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-265)||(746-997)
[»] chr8 (14 HSPs)
chr8 (1-258)||(8727735-8727979)
chr8 (9-261)||(44477441-44477678)
chr8 (9-261)||(44492599-44492836)
chr8 (1-265)||(23866423-23866674)
chr8 (147-265)||(17054533-17054650)
chr8 (151-315)||(18614217-18614382)
chr8 (196-260)||(23482053-23482117)
chr8 (9-169)||(27940946-27941091)
chr8 (204-260)||(39364919-39364975)
chr8 (206-273)||(29643374-29643440)
chr8 (205-261)||(14056563-14056619)
chr8 (205-261)||(25111976-25112032)
chr8 (206-261)||(24320670-24320725)
chr8 (204-260)||(21931696-21931752)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-258)||(14398-14635)
[»] chr2 (16 HSPs)
chr2 (9-273)||(19661442-19661690)
chr2 (9-260)||(6483536-6483772)
chr2 (9-260)||(6487003-6487239)
chr2 (121-265)||(26583744-26583886)
chr2 (119-260)||(23101463-23101604)
chr2 (9-258)||(23089057-23089292)
chr2 (147-261)||(5706023-5706137)
chr2 (9-258)||(23878826-23879060)
chr2 (196-260)||(23265133-23265197)
chr2 (196-260)||(23280201-23280265)
chr2 (199-260)||(21908353-21908414)
chr2 (9-90)||(23101620-23101700)
chr2 (204-260)||(24661576-24661632)
chr2 (206-261)||(10577-10632)
chr2 (206-261)||(25180929-25180984)
chr2 (189-261)||(26885166-26885237)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-265)||(1893-2143)
scaffold0117 (1-265)||(8570-8820)
[»] chr1 (12 HSPs)
chr1 (9-260)||(20437024-20437261)
chr1 (147-265)||(41111977-41112094)
chr1 (196-315)||(32651563-32651682)
chr1 (196-260)||(18712790-18712854)
chr1 (205-260)||(19663517-19663572)
chr1 (204-260)||(20805320-20805376)
chr1 (205-260)||(11158093-11158148)
chr1 (204-258)||(10811785-10811839)
chr1 (206-261)||(20851132-20851187)
chr1 (206-261)||(20857759-20857814)
chr1 (206-261)||(21706276-21706331)
chr1 (206-261)||(21710818-21710873)
[»] scaffold0553 (1 HSPs)
scaffold0553 (9-261)||(10195-10433)
[»] scaffold0544 (1 HSPs)
scaffold0544 (9-261)||(1525-1763)
[»] scaffold0058 (1 HSPs)
scaffold0058 (8-265)||(109-350)
[»] scaffold0247 (2 HSPs)
scaffold0247 (112-265)||(11248-11401)
scaffold0247 (9-92)||(11159-11241)
[»] scaffold0456 (4 HSPs)
scaffold0456 (178-313)||(904-1039)
scaffold0456 (178-313)||(8049-8184)
scaffold0456 (8-92)||(806-889)
scaffold0456 (8-92)||(7951-8034)
[»] scaffold0154 (1 HSPs)
scaffold0154 (121-265)||(30772-30917)
[»] scaffold0090 (2 HSPs)
scaffold0090 (117-265)||(18081-18229)
scaffold0090 (8-92)||(17985-18068)
[»] scaffold0796 (2 HSPs)
scaffold0796 (147-265)||(1728-1845)
scaffold0796 (147-265)||(5751-5868)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-88)||(3471-3558)
[»] scaffold0476 (1 HSPs)
scaffold0476 (9-258)||(3295-3531)
[»] scaffold0077 (1 HSPs)
scaffold0077 (9-258)||(3624-3859)
[»] scaffold0129 (1 HSPs)
scaffold0129 (149-261)||(45274-45386)
[»] scaffold0004 (1 HSPs)
scaffold0004 (196-307)||(116887-116998)
[»] scaffold0222 (1 HSPs)
scaffold0222 (196-260)||(16811-16875)
[»] scaffold0461 (1 HSPs)
scaffold0461 (196-260)||(8-72)
[»] scaffold0310 (1 HSPs)
scaffold0310 (205-261)||(17643-17699)
[»] scaffold0146 (1 HSPs)
scaffold0146 (196-260)||(13623-13687)
[»] scaffold0107 (1 HSPs)
scaffold0107 (205-261)||(40531-40587)
[»] scaffold0020 (1 HSPs)
scaffold0020 (196-260)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (205-261)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (207-259)||(22594-22646)
[»] scaffold0124 (1 HSPs)
scaffold0124 (205-260)||(34276-34331)
[»] scaffold0609 (1 HSPs)
scaffold0609 (177-261)||(5857-5941)
[»] scaffold0139 (1 HSPs)
scaffold0139 (205-291)||(14967-15052)
[»] scaffold0138 (1 HSPs)
scaffold0138 (204-260)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (197-260)||(1378-1441)
[»] scaffold0815 (1 HSPs)
scaffold0815 (209-265)||(1453-1509)
[»] scaffold0001 (1 HSPs)
scaffold0001 (189-261)||(493028-493099)
[»] scaffold0348 (1 HSPs)
scaffold0348 (206-261)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (206-261)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (206-261)||(135438-135493)
[»] scaffold2054 (1 HSPs)
scaffold2054 (172-265)||(680-774)
[»] scaffold1318 (1 HSPs)
scaffold1318 (206-260)||(1913-1967)
[»] scaffold0453 (1 HSPs)
scaffold0453 (177-261)||(10550-10634)
[»] scaffold0335 (1 HSPs)
scaffold0335 (204-260)||(2628-2684)
[»] scaffold0261 (1 HSPs)
scaffold0261 (146-261)||(23569-23685)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 18873169 - 18873468
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  18873169 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 18873264  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18873265 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 18873355  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaacgcacaacggccggattctcttactat 300  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18873356 aggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacggccggattctctgactat 18873455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 15167984 - 15168242
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  15167984 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 15168079  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168080 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 15168170  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaa 273  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  15168171 aggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta-atttagaagaaa 15168242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 10896037 - 10895795
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  10896037 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 10895942  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaat 199  Q
         ||    ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  10895941 -----tt----acaagagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaat 10895852  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttac 256  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  10895851 taggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 14422802 - 14423043
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |         ||     
T  14422802 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca---------tt- 14422890  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14422891 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 14422986  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14422987 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 12710090 - 12709839
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaa 99  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||| |||| |||||||||| |||||| ||||||||||  |||||||||||||||  |    
T  12710090 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatta 12709992  T
Q  100 ccctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaat 199  Q
    |             || |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12709991 ca------------aatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaat 12709904  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  12709903 taggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 13123161 - 13122910
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaa 99  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||| |||| |||||||||| |||||| ||||||||||  |||||||||||||||  |    
T  13123161 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatta 13123063  T
Q  100 ccctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaat 199  Q
    |             || |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13123062 ca------------aatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaat 13122975  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13122974 taggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 13122910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 16009395 - 16009631
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  16009395 ttcatcaattcatccaatcaatcataattt-caatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 16009483  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  16009484 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaat 16009579  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16009580 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 13743616 - 13743768
Alignment:
Q  112 acaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt 211  Q
    |||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  13743616 acaagaaaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-ttt 13743714  T
Q  212 cagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13743715 caggaattataaattatgattattgagagatagtctcacccttaccttagtttt 13743768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 12590756 - 12590639
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 12590658  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  12590657 tcacccttaccttagtttt 12590639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 13007374 - 13007491
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 13007472  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  13007473 tcacccttaccttagtttt 13007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 16677239 - 16677348
Alignment:
Q  151 aatcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctc 248  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16677239 aatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctc 16677338  T
Q  249 accgttacct 258  Q
    ||| ||||||    
T  16677339 acccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 17651475 - 17651584
Alignment:
Q  151 aatcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctc 248  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17651475 aatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctc 17651574  T
Q  249 accgttacct 258  Q
    ||| ||||||    
T  17651575 acccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 20311107 - 20311051
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 21231015 - 21230959
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 21230959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  197 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 13743526 - 13743608
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaaca 91  Q
    ||||||||||| |||||| ||  |||||||| ||| ||||||||||||||||||  |||| ||||||||| |||| ||||||||    
T  13743526 attcatcaatttatccaaccaagcataattt-caaccaatttatgatcacagcaataacatagattaagtcttcaatctgaaca 13743608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||| ||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 831669 - 831629
Alignment:
Q  225 ttatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagtttt 831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 1196849 - 1196809
Alignment:
Q  225 ttatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagtttt 1196809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 34958578 - 34958618
Alignment:
Q  225 ttatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagtttt 34958618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 22750950 - 22751249
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  22750950 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 22751045  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22751046 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 22751136  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaacgcacaacggccggattctcttactat 300  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  22751137 aggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacgaccggattctctgactat 22751236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 38144773 - 38144532
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  38144773 ttcatcaattcatccaatcaatcgtaattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 38144685  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  38144684 ---acaatagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaat 38144589  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38144588 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 38144532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 19512204 - 19512441
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  19512204 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 19512289  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19512290 gttacaatagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 19512388  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19512389 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 28370291 - 28370055
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  28370291 ttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 28370206  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28370205 gttacaacagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 28370107  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28370106 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 270
Target Start/End: Original strand, 23528573 - 23528695
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 23528671  T
Q  247 tcaccgttaccttagttttagaag 270  Q
    ||||| ||||||||||||||||||    
T  23528672 tcacccttaccttagttttagaag 23528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 22438803 - 22438747
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttag 22438747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 34830024 - 34830139
Alignment:
Q  146 ttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatag 244  Q
    |||| ||||| ||||| |||||||  |||||||| |||||| | |||||| | ||||| |  |||||||||||||||| ||||  |||||||| |||||     
T  34830024 ttcaaaatcagcatcataccctaattctcaattttatcttcaagaactattctattagattgattttcagaaattatacatta-aattattgaaagataa 34830122  T
Q  245 tctcaccgttaccttag 261  Q
    || |||| |||||||||    
T  34830123 tcccacccttaccttag 34830139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 14763004 - 14762746
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  14763004 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 14762909  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762908 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 14762818  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaa 273  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  14762817 aggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta-atttagaagaaa 14762746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38311046 - 38310802
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  38311046 tacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---- 38310951  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310950 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 38310860  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  38310859 aggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 20248021 - 20247791
Alignment:
Q  15 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattctgaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    |||    
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---------tt----aca 20247935  T
Q  115 agagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcag 214  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247934 agaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcag 20247835  T
Q  215 aaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  20247834 aaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 24192771 - 24193009
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgat-cacagcagcaacaaagattaagttttcattctgaacattataaaaccctaat 106  Q
    ||||||||||| ||||||||| ||||| |||||||||| |||||||| ||||||| || || |||||||||||||||||||||||| | |         |    
T  24192771 attcatcaatttatccaatcaatcata-ttttcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcaca---------t 24192860  T
Q  107 tctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtc 205  Q
    |    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24192861 t----acaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtc 24192956  T
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24192957 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 9534146 - 9534382
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||  || ||  | |||||||||||||||||| ||||||| |         ||     
T  9534146 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattaca---------tt- 9534234  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9534235 ---acaacagaattaacatgatcaatacccat-tccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 9534330  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9534331 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 23370743 - 23370505
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  23370743 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 23370655  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  23370654 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 23370559  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  23370558 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 24933941 - 24933828
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||||||||||||||||||||   |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 24933843  T
Q  247 tcaccgttaccttag 261  Q
    ||||| |||||||||    
T  24933842 tcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 41455210 - 41455093
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||||||||||||| ||||||   |||   ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41455210 tcagaatcatcatcaatccctaattttcatcctattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 41455112  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  41455111 tcacccttaccttagtttt 41455093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 16801606 - 16801463
Alignment:
Q  121 ttaacatgatcattac-ccatatcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaat 218  Q
    |||||||||||||||| |||| || | ||| |||||||||||| |||||||| ||||||| |||||| ||| ||| ||||| ||||||||||||||||||    
T  16801606 ttaacatgatcattacaccat-tctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaat 16801509  T
Q  219 tatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||| || ||||||||||||||||||||||||| |||||||||||||    
T  16801508 tatatat-atgattattgagagatagtctcacccttaccttagtttt 16801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 55499244 - 55499104
Alignment:
Q  119 aattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaatttt-cagaa 216  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| | |||   || ||| ||||||||||||| | |||    
T  55499244 aattaacatgatcattacccat-tcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcagttaggtcaattttcccgaa 55499147  T
Q  217 attatagattat-gattattgagagatagtctcaccgttacct 258  Q
    |||| | |||||  |||| ||||||||||||||||| ||||||    
T  55499146 attacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  199 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 55499337 - 55499258
Alignment:
Q  12 atcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacat 92  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||| |   | |||||||| |||||||| ||||||    
T  55499337 atcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacat 55499258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||| |||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||| |||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 10389557 - 10389443
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10389557 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10389458  T
Q  247 tcaccgttaccttag 261  Q
     |||| |||||||||    
T  10389457 ccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 10414646 - 10414532
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  247 tcaccgttaccttag 261  Q
     |||| |||||||||    
T  10414546 ccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 10421316 - 10421202
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  247 tcaccgttaccttag 261  Q
     |||| |||||||||    
T  10421216 ccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||| |||||| | |||||||||||||| ||||| ||||||| |||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||| |||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 12097 - 11846
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||        
T  12097 tacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattata---- 12002  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  12001 -----tt----acaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaatt 11911  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11910 aggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 111504 - 111741
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  111504 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 111592  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111593 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 111688  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  111689 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 23057760 - 23058005
Alignment:
Q  14 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattctgaac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    ||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---------tt----ac 23057846  T
Q  114 aagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23057847 aagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttca 23057946  T
Q  214 gaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaa 273  Q
    | ||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  23057947 ggaattatagattatgattatcgagagatagtctcacccttacctta-atttagaagaaa 23058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 29614393 - 29614142
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||           
T  29614393 tacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacattc------ 29614300  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatctt-ccaaaactatgcaat 199  Q
       |||     ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||| |||||||     
T  29614299 ---aat-----acaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaac 29614208  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29614207 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 29614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 23839016 - 23839253
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |         ||     
T  23839016 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca---------tt- 23839104  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaa-actatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23839105 ---acaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaa 23839200  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23839201 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 10986418 - 10986180
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |         ||     
T  10986418 ttcatcaattcatccaatcaatcgtaattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca---------tt- 10986330  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10986329 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 10986234  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10986233 tttttagaaattatagattatgattattgaaagatagtctcacccttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 4477678 - 4477912
Alignment:
Q  12 atcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattctga 111  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |         ||        
T  4477678 atcaaatcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca---------tt---- 4477763  T
Q  112 acaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattt 210  Q
    |||| ||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  4477764 acaacagaattagcatgatcaatacccat-tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattt 4477862  T
Q  211 tcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4477863 tcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 18800255 - 18800497
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||||| || ||| | |||||||| ||||||| ||||||| | |         ||     
T  18800255 ttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcaca---------tt- 18800343  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaa 207  Q
       |||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  18800344 ---acaacagaattaacatgatcattactcat-tccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaa 18800439  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18800440 ttttcagaaattatagattatgattattgagagatagtctcacccttacattagtttt 18800497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 930229 - 930091
Alignment:
Q  126 atgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagat 225  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||    
T  930229 atgatcattacccat-tcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagat 930131  T
Q  226 tatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  930130 tatgattattgagagatagtctcacccttaccttagtttt 930091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 12168305 - 12168422
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 12168403  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  12168404 tcacccttaccttagtttt 12168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 19287214 - 19287331
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19287312  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  19287313 tcacccttaccttagtttt 19287331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 19785982 - 19785865
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  ||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtc 19785884  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  19785883 tcacccttaccttagtttt 19785865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 19878398 - 19878515
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19878496  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  19878497 tcacccttaccttagtttt 19878515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 19884174 - 19884291
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19884272  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| | |||||||||||    
T  19884273 tcaccctaaccttagtttt 19884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 34640100 - 34639986
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||| ||||||||||||||||   ||   |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34640100 tcagaaccatcatcaaaccctaattttcttattattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtc 34640001  T
Q  247 tcaccgttaccttag 261  Q
    ||||| |||||||||    
T  34640000 tcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 34646774 - 34646660
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    |||||| ||||||||||||||||   ||   |||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34646774 tcagaaccatcatcaaaccctaattttcttattattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtc 34646675  T
Q  247 tcaccgttaccttag 261  Q
    ||||| |||||||||    
T  34646674 tcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 21565449 - 21565214
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | |         ||     
T  21565449 ttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcaca---------tt- 21565361  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 207  Q
       |||| | ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  21565360 ---acaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 21565266  T
Q  208 ttttcagaaattatagattat-gattattgagagatagtctcaccgttacct 258  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||| ||||||    
T  21565265 ttttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 25469816 - 25469704
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||| |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  247 tcaccgttaccttag 261  Q
    ||||| |||||||||    
T  25469718 tcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 24512899 - 24512843
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttag 24512843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||| ||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  177 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||| | ||||| ||||||| |||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||| ||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||| ||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||| ||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 988 - 1237
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||        
T  988 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattata---- 1082  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  1083 -----tt----acaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaatt 1173  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1174 aggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 49989 - 50238
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||        
T  49989 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattata---- 50083  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  50084 -----tt----acaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaatt 50174  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50175 aggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 50238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 111726 - 111942
Alignment:
Q  37 tttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattctgaacaagagaattaacatgatcattac 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    |||||||||||||||||||||||||    
T  111726 tttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattata---------tt----acaagagaattaacatgatcattac 111812  T
Q  137 ccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatt 235  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  111813 ccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattatt 111912  T
Q  236 gagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||| |||||||||||||    
T  111913 gagagatagtctcacccttaccttagtttt 111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8046078 - 8045828
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||        
T  8046078 tacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattata---- 8045983  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
         ||    |||||||||||||||| ||| |||||||| ||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||||    
T  8045982 -----tt----acaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaactatgcaatt 8045892  T
Q  201 aggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  8045891 aggtcaa-tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 8045828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 11847916 - 11848173
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         
T  11847916 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat----- 11848010  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa------tttatcttccaaaactat 194  Q
        |||    | || || |||||||||||||||||||||  | |||||||||| |||||||||||||||||||||      || || || |||||||||    
T  11848011 ----att----ataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactat 11848102  T
Q  195 gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    || | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11848103 gccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 11848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 53483646 - 53483760
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagt 245  Q
    |||||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagt 53483744  T
Q  246 ctcaccgttaccttag 261  Q
    |||||| |||||||||    
T  53483745 ctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 15408139 - 15408195
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 14486632 - 14486713
Alignment:
Q  177 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| |||||  |||||||||||| ||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||| ||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 27906205 - 27906321
Alignment:
Q  146 ttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatag 244  Q
    |||| ||||| ||||| |||||||  |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| ||||| |||||     
T  27906205 ttcaaaatcaacatcacaccctaattctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataa 27906304  T
Q  245 tctcaccgttaccttag 261  Q
    || |||| ||| |||||    
T  27906305 tcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 22724742 - 22724695
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcacc 251  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcacc 22724695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||| ||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 15747592 - 15747552
Alignment:
Q  225 ttatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagtttt 15747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 997 - 746
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||| ||||||||||| || ||||||||||||        
T  997 tacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaacaa-gattaagtttttatcctgaacattata---- 903  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaat 199  Q
         ||    ||||||| |||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  902 -----tt----acaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaat 812  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  811 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 8727979 - 8727735
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |        
T  8727979 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca---- 8727884  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaat 199  Q
         ||    |||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  8727883 -----tt----acaacagaattaacatgatcaatacccatacccct-cagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaat 8727794  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  8727793 taggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 44477441 - 44477678
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  44477441 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 44477526  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477527 gttacaacagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44477625  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44477626 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 44492599 - 44492836
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  44492599 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 44492684  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492685 gttacaacagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44492783  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44492784 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 23866423 - 23866674
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaa 99  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||| |||| ||||| |||| |||||| ||||||||||  |||||||||||||||  |    
T  23866423 tacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaacaa-gattaagtttatattctgaacattatatta 23866521  T
Q  100 ccctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaat 199  Q
    |             || |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23866522 ca------------aatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaat 23866609  T
Q  200 taggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  23866610 taggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 23866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 17054533 - 17054650
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 17054631  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| ||||||| |||||    
T  17054632 tcacccttaccttggtttt 17054650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 18614217 - 18614382
Alignment:
Q  151 aatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 249  Q
    ||||| ||| |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||||||||||||||||||    
T  18614217 aatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctca 18614316  T
Q  250 ccgttaccttagttttagaag-aaacgcacaacggccggattctcttactatacttgttcatctcac 315  Q
    || ||||||||  |||||||| |||||||||| |  |||||||||| ||| ||||||||| ||||||    
T  18614317 cccttacctta-atttagaagaaaacgcacaatgatcggattctctgactctacttgttcttctcac 18614382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 27941091 - 27940946
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| | || ||  | ||||||| ||||||||||||||||||          |||     
T  27941091 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacatta---------catt- 27941003  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaa 169  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  27941002 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||| ||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 29643440 - 29643374
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaa 273  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||| ||||||||  |||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta-atttagaagaaa 29643374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 14056619 - 14056563
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttag 14056563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 25111976 - 25112032
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||| |||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttag 25112032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||| ||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 14635 - 14398
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaatt 107  Q
    ||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||| || || ||||||||||||||||| |||||| | |         ||    
T  14635 attcatcaatttatccaatcaatcata-ttttcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcaca---------tt 14546  T
Q  108 ctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtca 206  Q
        |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14545 ----acaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtca 14450  T
Q  207 attttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14449 attttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 19661690 - 19661442
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |         ||     
T  19661690 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca---------tt- 19661602  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19661601 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 19661506  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaa 273  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||||||  |||||||||||    
T  19661505 tttcagaaattatagattatgattatcgagagaaagtctcacccttacctta-atttagaagaaa 19661442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 6483536 - 6483772
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  6483536 ttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 6483621  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6483622 gttacaacagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6483720  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6483721 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 6487003 - 6487239
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| |||||||             |    
T  6487003 ttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacatta-------------c 6487088  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 208  Q
       |||| |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6487089 gttacaacagaattaacatgatcaatacccat-tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6487187  T
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6487188 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 26583744 - 26583886
Alignment:
Q  121 ttaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaatta 220  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  26583744 ttaacatgatcattaccctt-tcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaatta 26583841  T
Q  221 tagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  26583842 tagattatgattattgagagatagtctcacccttaccttagtttt 26583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 23101604 - 23101463
Alignment:
Q  119 aattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaattttcagaaa 217  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| | |||   ||  ||||||||||||||||| ||||    
T  23101604 aattaacatgatcattacccat-tcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaaacaattaggtcaattttccgaaa 23101507  T
Q  218 ttatagattat-gattattgagagatagtctcaccgttacctta 260  Q
    ||| | |||||  |||| ||||||||||||||||| ||||||||    
T  23101506 ttacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 23089292 - 23089057
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | |         ||     
T  23089292 ttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcaca---------tt- 23089204  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 207  Q
       |||| | ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  23089203 ---acaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 23089109  T
Q  208 ttttcagaaattatagattat-gattattgagagatagtctcaccgttacct 258  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||| ||||||    
T  23089108 ttttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagt 245  Q
    |||||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagt 5706039  T
Q  246 ctcaccgttaccttag 261  Q
    |||||| |||||||||    
T  5706038 ctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 23878826 - 23879060
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| |  || ||||||||||||||||||||||| || ||  | |||||||| |||||||||||||||         |  |||     
T  23878826 ttcatcaattcatccaatcaattcta-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacat---------cacatt- 23878914  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaa 207  Q
       |||| | ||||||||||||||||||||   |||| |||||||||||| | |||||||||||||||||| ||| | |||   || |||||||||||||    
T  23878915 ---acaacataattaacatgatcattaccccattcccctcagaatcatcaac-aaccctaaccctcaatttaatcct-caaggttaagcaattaggtcaa 23879009  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    ||||  ||||||||| || || |||| ||||||||||||||||| ||||||    
T  23879010 tttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  199 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 23101700 - 23101620
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaac 90  Q
    ||||| |||||||||||||| | ||| ||||||||||||||||||||||| || ||  | |||||||| |||||||| ||||    
T  23101700 ttcatgaattcatccaatcaattata-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaac 23101620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||| ||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 26885166 - 26885237
Alignment:
Q  189 aactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||| | ||||| | ||||||||||||||||| |||| ||||||||| ||||| || |||| |||||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 2143 - 1893
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||          
T  2143 tacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacatta------ 2050  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
       ||||    |||||||||||||||| ||||||||||||   || ||| |||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  2049 ---aatt----acaagagaattaacataatcattacccatt--ccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaactatacaatt 1959  T
Q  201 aggtcaatttt-cagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  1958 aggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagtttt 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8820 - 8570
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaac 100  Q
    ||||||||||||||||||||| |||||||| || | |||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||||          
T  8820 tacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacatta------ 8727  T
Q  101 cctaattctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaatt 200  Q
       ||||    |||||||||||||||| ||||||||||||   || ||| |||||||||||||||||||||||||| |||| |||||||||||| |||||    
T  8726 ---aatt----acaagagaattaacataatcattacccatt--ccatcataatcatcatcaaaccctaaccctcaaattattttccaaaactatacaatt 8636  T
Q  201 aggtcaatttt-cagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  8635 aggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagtttt 8570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 20437261 - 20437024
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |         ||     
T  20437261 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca---------tt- 20437173  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| | |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20437172 ---acaacataattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 20437077  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20437076 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 41111977 - 41112094
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 41112075  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  41112076 tcacccttaccttagtttt 41112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 32651563 - 32651682
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaag-aaacgcacaacggccggattctct 294  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||  |||||||| |||| |||||||  ||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 32651661  T
Q  295 tactatacttgttcatctcac 315  Q
     |||  |||||||| ||||||    
T  32651662 gactccacttgttcttctcac 32651682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||| ||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacct 258  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||| ||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 10433 - 10195
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  10433 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 10345  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  10344 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 10249  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  10248 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 1763 - 1525
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |         ||     
T  1763 ttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca---------tt- 1675  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 207  Q
       |||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  1674 ---acaacagaattaacatgatcaatacccat-tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 1579  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1578 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 109 - 350
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaatt 107  Q
    ||||||||||| |||||| || ||||||||| ||| ||||||||||||||| ||  |||| ||||||||| |||| ||||||||        || ||||     
T  109 attcatcaatttatccaaccaatcataattt-caaccaatttatgatcacatcaataacatagattaagtcttcaatctgaaca--------ccataat- 198  T
Q  108 ctgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa 207  Q
        |||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  199 ----acaagaaaattaacatgatcattacccat-tcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa 293  T
Q  208 ttttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
     ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  294 -tttcagaaattatagattatggttattgagagatagtctcacccttaccttagtttt 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 11248 - 11401
Alignment:
Q  112 acaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattt 210  Q
    |||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  11248 acaacagaattaacatgatcattactcat-tccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattt 11346  T
Q  211 tcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11347 tcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 11159 - 11241
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacat 92  Q
    |||||||||||||||||||| | ||| |||||||||||||| ||||||||||| ||  |  ||||||| ||||||| |||||||    
T  11159 ttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacat 11241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 904 - 1039
Alignment:
Q  178 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaacgca 277  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 1003  T
Q  278 caacggccggattctcttactatacttgttcatctc 313  Q
    ||||| ||||||||||| ||||||||||||| ||||    
T  1004 caacgaccggattctctgactatacttgttcttctc 1039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 8049 - 8184
Alignment:
Q  178 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaagaaacgca 277  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 8148  T
Q  278 caacggccggattctcttactatacttgttcatctc 313  Q
    ||||| ||||||||||| ||| ||||||||| ||||    
T  8149 caacgaccggattctctgactctacttgttcttctc 8184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 806 - 889
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacat 92  Q
    ||||||||||| |||||||| |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  806 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacat 889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 7951 - 8034
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacat 92  Q
    ||||||||||| |||||||| |||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  7951 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacat 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 30772 - 30917
Alignment:
Q  121 ttaacatgatcattac-ccatatcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaat 218  Q
    ||||||||||| |||| |||| |||| ||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  30772 ttaacatgatcgttacaccat-tcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaat 30870  T
Q  219 tatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  30871 tatagattatgattattgagagatagtctcacccttaccttagtttt 30917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 18081 - 18229
Alignment:
Q  117 agaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcaga 215  Q
    ||||||||||||| ||||||| || |||| | ||||||||||| ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||||| |    
T  18081 agaattaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaa 18179  T
Q  216 aattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18180 aattatagattatgattattgagagatagtctcacccttaccttagtttt 18229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 17985 - 18068
Alignment:
Q  8 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacat 92  Q
    ||||||||||| ||||||||| ||  ||||| ||||||||| |||||||||||| ||||| || |||||||||||||||| ||||    
T  17985 attcatcaatttatccaatcaatccaaattt-caatcaattcatgatcacagcaacaacataggttaagttttcattctggacat 18068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 1845 - 1728
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 1747  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  1746 tcacccttaccttagtttt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 5868 - 5751
Alignment:
Q  147 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 246  Q
    ||||||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 5770  T
Q  247 tcaccgttaccttagtttt 265  Q
    ||||| |||||||||||||    
T  5769 tcacccttaccttagtttt 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3471 - 3558
Alignment:
Q  1 tacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctga 88  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3471 tacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 3531 - 3295
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| | ||| |||||||||||||| ||||||||||| ||  | |||||||| |||||||||||||||         |  |||     
T  3531 ttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacat---------cacatt- 3443  T
Q  109 tgaacaagagaattaacatga-tcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 206  Q
       |||| | ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||  ||||   || ||||||||||||    
T  3442 ---acaacaaaattaacatgattcattacccat-tcccctcagaatcatcatcaaaccctaaccctcaattttatc-cccaaggttaagcaattaggtca 3348  T
Q  207 attttcagaaattatagattat-gattattgagagatagtctcaccgttacct 258  Q
    |||||| ||||||| | |||||  |||| ||||||||||||||||| ||||||    
T  3347 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 3859 - 3624
Alignment:
Q  9 ttcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattataaaaccctaattc 108  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||||||| || ||  | |||||||| |||||||| |||||| | |         ||     
T  3859 ttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcaca---------tt- 3771  T
Q  109 tgaacaagagaattaacatgatcattacccatatcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 207  Q
       |||| | ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  3770 ---acaacataattaacatgatcattacccatccccct-cagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 3676  T
Q  208 ttttcagaaattatagattat-gattattgagagatagtctcaccgttacct 258  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||| ||||||    
T  3675 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 45386 - 45274
Alignment:
Q  149 agaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 247  Q
    |||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  248 caccgttaccttag 261  Q
    |||| |||||||||    
T  45287 cacccttaccttag 45274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 116887 - 116998
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaag-aaacgcacaacggccggattctct 294  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||  |||||||| |||| |||||||  ||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 116985  T
Q  295 tactatacttgtt 307  Q
     |||  |||||||    
T  116986 gactccacttgtt 116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 17643 - 17699
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttag 17699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 40587 - 40531
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 40531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  196 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 135473 - 135529
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 22646 - 22594
Alignment:
Q  207 attttcagaaattatagattatgattattgagagatagtctcaccgttacctt 259  Q
    |||||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttacctt 22594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  177 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || |||| |||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 15052 - 14967
Alignment:
Q  205 caattttcagaaattatagattatgattattgagagatagtctcaccgttaccttagttttagaag-aaacgcacaacggccggattc 291  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||| ||||||||   ||||||| ||||||||||||  |||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta--attagaagaaaacgcacaacgatcggattc 14967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  197 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||| ||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 1453 - 1509
Alignment:
Q  209 tttcagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||||||| |||| ||| |||||||| |||||||||| |||||||| ||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaatttt 1509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 493099 - 493028
Alignment:
Q  189 aactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    |||||| | ||||| | ||||||||||||||||| |||| ||||||||| ||||| ||||||| |||||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| |||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||| |||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| ||||||  |||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

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Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 265
Target Start/End: Original strand, 680 - 774
Alignment:
Q  172 ctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcaccgttaccttagtttt 265  Q
    |||||||||| ||| | |||||| |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || |||| |||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagtttt 774  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  206 aattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||| ||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 10634 - 10550
Alignment:
Q  177 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccgttaccttag 261  Q
    ||||||||| | |||||| | ||||| | ||||||||||||||||| |||| ||| ||||| ||||| || |||  |||||||||    
T  10634 tttatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttag 10550  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  204 tcaattttcagaaattatagattatgattattgagagatagtctcaccgttacctta 260  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||| ||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

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Target: scaffold0261 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 23685 - 23569
Alignment:
Q  146 ttcagaatcatcatcaaaccctaaccctcaattta-tcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatag 244  Q
    |||| ||||| ||||| |||||||  ||||||||  ||||| | |||||| |  |||| | ||||||||||||||||| |||||||| ||| | |||||     
T  23685 ttcaaaatcagcatcacaccctaattctcaattttgtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaagataa 23586  T
Q  245 tctcaccgttaccttag 261  Q
    || |||| |||||||||    
T  23585 tcccacccttaccttag 23569  T

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