View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19286_high_15 (Length: 300)

Name: NF19286_high_15
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19286_high_15
NF19286_high_15
[»] chr3 (1 HSPs)
chr3 (9-300)||(34899685-34899975)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 34899685 - 34899975
Alignment:
Q  9 accacagaagcatatgcaaatgttataatagggataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaatttt 108  Q
    |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899685 accacacaagcatatgcaaatgttataataag-ataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaatttt 34899783  T
Q  109 gtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgtatacacgcaggggaagacacaatttagcttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34899784 gtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttt 34899883  T
Q  209 tgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899884 tgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 34899975  T

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