View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19286_high_3 (Length: 452)
Name: NF19286_high_3
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19286_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 32 - 452
Target Start/End: Original strand, 28987933 - 28988347
Alignment:
| Q |
32 |
attgaagatgtgtttagtgtccaacctgtgtcagcgtgtggttacattcaattacttccattttctgaaattagtagctgtgtcagtgtcagtggagtat |
131 |
Q |
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| T |
28987933 |
attgaagatgtgtttagtgtccaacctgtgtcagcgtgtggttacattcaattacttccattttctaaaattagtagctgtgtcagtgtcagtg---ttt |
28988029 |
T |
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| Q |
132 |
cataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacaca |
231 |
Q |
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| T |
28988030 |
cataggtagtgagttgttactagtaagttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacaca |
28988129 |
T |
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| Q |
232 |
acacctacacataaatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagcttt |
331 |
Q |
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| T |
28988130 |
acacctacacataaatcacctgtgtcgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagcttt |
28988229 |
T |
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| Q |
332 |
aaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgattt |
431 |
Q |
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| T |
28988230 |
aaataattgtagtgtggtgggggaaaaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgattt |
28988326 |
T |
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| Q |
432 |
tgagccctgttattttgtggc |
452 |
Q |
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| T |
28988327 |
tgagccctgttattttgtggc |
28988347 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 2468485 - 2468521
Alignment:
| Q |
68 |
tgtggttacattcaattacttccattttctgaaatta |
104 |
Q |
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| T |
2468485 |
tgtggttacattcaattacttccattttcttaaatta |
2468521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 27131685 - 27131721
Alignment:
| Q |
68 |
tgtggttacattcaattacttccattttctgaaatta |
104 |
Q |
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| T |
27131685 |
tgtggttacattcaattacttccattttcttaaatta |
27131721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 9018882 - 9018918
Alignment:
| Q |
68 |
tgtggttacattcaattacttccattttctgaaatta |
104 |
Q |
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| T |
9018882 |
tgtggttacattcaattactttcattttctcaaatta |
9018918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
| Q |
253 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
282 |
Q |
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| T |
44572654 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
44572683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 38685311 - 38685340
Alignment:
| Q |
68 |
tgtggttacattcaattacttccattttct |
97 |
Q |
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| T |
38685311 |
tgtggttacattcaattacttccattttct |
38685340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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