View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19286_high_4 (Length: 353)
Name: NF19286_high_4
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19286_high_4 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0151 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 21276737 - 21276442
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21276737 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgaccctctttgtgatatagatgtgggggaggttgttggtttacacacagatctg |
21276638 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
21276637 |
-attggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaattctagtttagatgatagtagcgagt |
21276539 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctca |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21276538 |
ttggatgtattatcactgcttgtaaacagctgttagtagatagatttcaaaactctcatgttgagttcagcaagaggcaagcaaataggatagctca |
21276442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 26951790 - 26951455
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||| |||||||| || || |
|
|
| T |
26951790 |
tagggatgatgatggtgcttttgtacttgcaagaacagaatggtttgcccctatttgtgatatagaggtgggggaagctgttggactacacacaactttg |
26951691 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||| |||| |||| ||| |
|
|
| T |
26951690 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattatagtctagaagatagtagcaagt |
26951591 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
26951590 |
ttggatgtattatcactgcttgtaaacaactgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga |
26951491 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
26951490 |
gttagctcaggcagccctatctaatcctagccccca |
26951455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 33324471 - 33324800
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||| ||| |||||||||| |||| ||||| |||| ||||| || || ||| | || |
|
|
| T |
33324471 |
tagggatgatgatggtgcatttgttcttgcaagaacggaatggtttaccc-tctttgtgatgtagaggtgggagaggcggttggattgcatacaaccttg |
33324569 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| |||| |||||| ||||||||||||||| | || | |
|
|
| T |
33324570 |
gattggatctctaatcaacaatttgataatgtcgattttgtacttgattgtaaaaaagttgttaattgtgtcaattttagtttagatgataacaatgaat |
33324669 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||| ||||||||| ||||||||||||| ||| || || |||| || |||||| | ||||||||| || |||||| ||||||| |||||| ||| | |
|
|
| T |
33324670 |
ttgaatgtattattgctgcttgtaaacagttgcaagaggatagattccaaaactct--tattgagttcaacaggaggcacgcaaata-ggtagcccacga |
33324766 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagcccc |
345 |
Q |
| |
|
||| ||||| || |||||||||||||| |||| |
|
|
| T |
33324767 |
actagttcaggtagccctgtctaatcctaacccc |
33324800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 18178884 - 18179024
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||| |||||| | |||| |||| || |
|
|
| T |
18178884 |
tagggatgttgatggtgcttttgttcttgcaagaacaaaatggtttgctccactttgtgatatagatgt-ggggaggctgttggactgcacaaagctttg |
18178982 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgtt |
154 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18178983 |
gattggctctctaatcaacagtttgataatgtagattttgtt |
18179024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 23556550 - 23556672
Alignment:
| Q |
68 |
tgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaa |
167 |
Q |
| |
|
||||||||||| ||||| |||| |||||| ||||||||| || |||||||| ||||| |||| | ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
23556550 |
tgtgatatagacgtgggagaggctgttggattacacacaactttggattggacctctattcaatagtttgacaatgtcgattttgtatttgattgtaaaa |
23556649 |
T |
|
| Q |
168 |
gggttgttgattggatcaattct |
190 |
Q |
| |
|
| ||||||||||| |||||||| |
|
|
| T |
23556650 |
gagttgttgattgtgtcaattct |
23556672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 27877462 - 27877803
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || |
|
|
| T |
27877462 |
tagggatgaggatgatgcttttgtgcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggctgttggtctacacacatctttg |
27877561 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
27877562 |
gattggctttctaatcaaaggtttgataatgtagattttgttcttgattgtaaaagggttgttgattgcatcaactctagtttagatgatagtagcgagt |
27877661 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
27877662 |
ttggatgtattatcactgcttgtaaacagctgctagtagatagatttcataactctcatgttgagttcagcaggaggcaagcaaatagggtagctcacga |
27877761 |
T |
|
| Q |
313 |
ggtagctcaggc-agcctgtctaatcctagcccccacgttat |
353 |
Q |
| |
|
| |||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
27877762 |
gttagctcaggcaaccctgtctaatcctagccgccacgttat |
27877803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 10395707 - 10395367
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||| || ||| || |
|
|
| T |
10395707 |
tagggatgatgatggtgcttttgttcttgtaagaacaaaatagtttgcccctctttgtgatatagatgtgggggaaactgttgggctaca-acggctttg |
10395609 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
10395608 |
gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaattcaagtttagatgatagtagcgagt |
10395509 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || ||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
10395508 |
ttggatgtattagcactgcttgtaaacagctgctagttgataaattccagaactcttatgttaagttcagcaggaggcaagcaaatagggtagctcacga |
10395409 |
T |
|
| Q |
313 |
ggtagctcaggcagcc-tgtctaatcctagcccccacgttat |
353 |
Q |
| |
|
| ||||||| |||||| ||||| ||||||||||||| ||||| |
|
|
| T |
10395408 |
gttagctcaagcagccatgtctgatcctagcccccatgttat |
10395367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 17321636 - 17321971
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||| || || |
|
|
| T |
17321636 |
tagggatgatgatggtgcttttgttcttacaagaacaaaatggtttgcccctctttgtgatatagatgtaggagaggtcgttggattacacacaactttg |
17321735 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| ||||||| |||||||| |||| ||||||||||| ||||||||||| ||||||| | |||||||| |
|
|
| T |
17321736 |
gattggatctctaatcaacagtttgacaatgtcgattttgcacttgattgcaaaaaagttgttgattgtgtcaattctagtatagatgacagtagcgagt |
17321835 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||| ||||| | ||||||||||||| || || | || ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
17321836 |
ttggatgcattattagtgcttgtaaacagttgttattggatagatttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacga |
17321935 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
17321936 |
gttagctcaagcagccctatctaatcctagccccca |
17321971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 12538858 - 12539212
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||| ||| |||||| |||||||| ||||||| |||||||||| || |||||| |||||| || | |
|
|
| T |
12538858 |
tagggatgacgattgtgcttttgttcttgtaagaacgaaattgtttgctcctctttgcaatatagacgtgggggaggctgctggtttgcacacaactatt |
12538957 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||| | || |||||||| ||||| | || ||||||||||||||||||||||| ||||||||||| | ||| |||| ||||||||| |||||| | |
|
|
| T |
12538958 |
gattggatttccaatcaacagtttgacagcgtcgattttgttcttgattgtaaaagagttgttgattgtgttaatgctagcctagatgatagtagcgaat |
12539057 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacag-------------------ctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaag |
293 |
Q |
| |
|
|||| |||||||| | ||||||||||||| ||| |||| || ||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
12539058 |
ttgggtgtattattactgcttgtaaacagttgctagtggtgtaaacaactgttagtggatagatttcagaactctcatgtcgagttcaacaggaggcaag |
12539157 |
T |
|
| Q |
294 |
caaatagggtagctcacaaggtagctcaggcagcc-tgtctaatcctagccccca |
347 |
Q |
| |
|
|||||||| |||||||| || ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
12539158 |
caaataggatagctcacgagttagctgatgcagccatgtctaatcctagccccca |
12539212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 40609929 - 40610029
Alignment:
| Q |
254 |
tgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcag-cctgtctaatcctagcccccacgtta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||| ||||||||||||| || || || |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
40609929 |
tgatttcagaactctcatgttgagttcatcagaagataagtaaatagggtagcttacgagttaattcaggcagccctgtctaatcctaacccccacgtta |
40610028 |
T |
|
| Q |
353 |
t |
353 |
Q |
| |
|
| |
|
|
| T |
40610029 |
t |
40610029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 346
Target Start/End: Original strand, 2114299 - 2114451
Alignment:
| Q |
195 |
tagatgataatagcgagtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagc |
294 |
Q |
| |
|
|||||||||||| |||| |||| ||||| || |||||||||||| | |||| || ||||||||||||||||||| ||||||| || || | |||| |
|
|
| T |
2114299 |
tagatgataataacgagcttgggtgtatcatatatgcttgtaaacacttattagttaatagatttcagaactctcatgtcgagttcaacaggaaggaagc |
2114398 |
T |
|
| Q |
295 |
aaatagggtagctcacaaggtagctcaggcag-cctgtctaatcctagccccc |
346 |
Q |
| |
|
||| |||| |||||| | ||||| |||||| ||| || ||||||||||||| |
|
|
| T |
2114399 |
gaatggggtcgctcacgaattagcttaggcagccctatccaatcctagccccc |
2114451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 319
Target Start/End: Complemental strand, 3601450 - 3601265
Alignment:
| Q |
134 |
tttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgctt |
233 |
Q |
| |
|
|||||||| || || |||| |||||||| ||||| |||||||||| | ||||| | |||||||| ||||| || |||| ||||| || |||||| |
|
|
| T |
3601450 |
tttgataacgtggactttgctcttgattccaaaagagttgttgattttgtgaattcatatgtagatgatgatagcaaggttggttgtatcatatttgctt |
3601351 |
T |
|
| Q |
234 |
gtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagct |
319 |
Q |
| |
|
||||||| | |||| || ||||||||||||||||||| ||||||| | ||||||||| ||| ||| |||||| || ||||| |
|
|
| T |
3601350 |
gtaaacaattattagttaatagatttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct |
3601265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 23059691 - 23059356
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
23059691 |
tagggatgatgatggtgcttttgtacttgcaagaacagaatggtttgcccctatttgtgatatagatgtgggggaagctgttgggctacacacggctttg |
23059592 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
23059591 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
23059492 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
23059491 |
ttggatgtattatcactacttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga |
23059392 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
23059391 |
gttagctcaggcagtcctatctaatcctagccccca |
23059356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 111 - 347
Target Start/End: Original strand, 16889001 - 16889237
Alignment:
| Q |
111 |
tggattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcga |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||| |||| |||||| |
|
|
| T |
16889001 |
tggattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctaatctagaagatagtagcga |
16889100 |
T |
|
| Q |
211 |
gtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcac |
310 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16889101 |
gtttggatgtattatcactgtttgtaaacagccgctagttgatagatttcagaactctcatgttgagttcagtcggaggcaagcaaatagggtagctcac |
16889200 |
T |
|
| Q |
311 |
aaggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
|| ||||||| |||| ||| |||||||||||| |||| |
|
|
| T |
16889201 |
gagttagctca-gcagccctatctaatcctagctccca |
16889237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 37857106 - 37857009
Alignment:
| Q |
227 |
attgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggc |
324 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
37857106 |
attgcttgtaaacaactgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaagcaaatagagtagctcacgagttagctcaggc |
37857009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 35096732 - 35096837
Alignment:
| Q |
25 |
tggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctct |
124 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||| ||| | |||||||||||||| |||||| ||| ||||| || |||||| |||||||| ||||| |
|
|
| T |
35096732 |
tggtgtttttgttcttgcaaagacggaatggtttgctcctttgtgtgatatagatgtaggggagactgtcggtttgcatacagctttggattgggtctct |
35096831 |
T |
|
| Q |
125 |
aatcaa |
130 |
Q |
| |
|
|||||| |
|
|
| T |
35096832 |
aatcaa |
35096837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 343
Target Start/End: Original strand, 35096868 - 35097000
Alignment:
| Q |
212 |
tttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcaca |
311 |
Q |
| |
|
||||| ||||||||| ||||||||||| || |||| || ||||||||||||||||||| ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
35096868 |
tttggttgtattatctccgcttgtaaacaaatgttagtggatagatttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacg |
35096967 |
T |
|
| Q |
312 |
aggtagctcaggc-agcctgtctaatcctagcc |
343 |
Q |
| |
|
|| |||||||| | | ||| ||||||||||||| |
|
|
| T |
35096968 |
agttagctcagacaaccctatctaatcctagcc |
35097000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 353
Target Start/End: Original strand, 46078345 - 46078560
Alignment:
| Q |
138 |
ataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgcttgtaa |
237 |
Q |
| |
|
||||||| || |||| |||||||| |||||| |||||||||| | ||||| || |||||||||| | ||||||||| |||||||| ||||||||| |
|
|
| T |
46078345 |
ataatgtggactttgatcttgattctaaaagagttgttgattttgtgaattcacgtgtagatgataacaacgagtttggttgtattatatctgcttgtaa |
46078444 |
T |
|
| Q |
238 |
acagctgctagtatattgattt-cagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcagcctgtctaat |
336 |
Q |
| |
|
| || | ||| || ||||| |||||||||||||| ||| ||| |||||||||| |||||| ||| |||||| || || || || || ||| ||||| |
|
|
| T |
46078445 |
atagttatcagttaatagattttcagaactctcatgtcgagctcaacaagaggcaaacaaata-ggtcgctcacgagttaacttagacaccctacctaat |
46078543 |
T |
|
| Q |
337 |
cctagcccccacgttat |
353 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
46078544 |
cctagcccccatgttat |
46078560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 17283858 - 17283603
Alignment:
| Q |
26 |
ggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctcta |
125 |
Q |
| |
|
|||| |||||||||||| | |||||| | |||||| || | ||||| | | || | ||||||| ||| || ||||| ||| || |||| ||| | || | |
|
|
| T |
17283858 |
ggtgattttgttcttgccaaaacagattcgtttgctcccttgtgtgacacaaatataggggaggctgtcgggttacatacaactttggaatgggtatcaa |
17283759 |
T |
|
| Q |
126 |
atcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattat |
225 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||| |||||| ||||||||| | ||||| | ||||| |||||| ||||||||| ||||| || |
|
|
| T |
17283758 |
ctcaacagtttgataatgtggactttgctcttgattctaaaagagttgttgatcttgtgaattcacatgtagataataataacgagtttggttgtatcat |
17283659 |
T |
|
| Q |
226 |
cattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttca |
281 |
Q |
| |
|
||||||||||||| || |||| || |||||||||||||| |||| ||||||| |
|
|
| T |
17283658 |
atttgcttgtaaacaactattagtcaatagatttcagaactcttatgtcgagttca |
17283603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 37857246 - 37857115
Alignment:
| Q |
43 |
aagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaacattttgataat |
142 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |||| || ||||||| || || | |||||||| ||||||||||||| ||||||||| |
|
|
| T |
37857246 |
aagaacggaatggtttgcccctctttgtgacgtagaggtggcgg------ttggtttgcatgcatcattggattggatctctaatcaacaatttgataat |
37857153 |
T |
|
| Q |
143 |
gtagattttgttcttgattgtaaaagggttgttgattg |
180 |
Q |
| |
|
|| |||||| | ||||||||||||| |||||||||| |
|
|
| T |
37857152 |
gttgattttatacttgattgtaaaatatttgttgattg |
37857115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 6969552 - 6969685
Alignment:
| Q |
195 |
tagatgataatagcgagtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagc |
294 |
Q |
| |
|
||||||||||||| |||||||| ||||| || |||||||| ||| || || | || ||||||||||||||||||| || |||| |||||| ||| |
|
|
| T |
6969552 |
tagatgataatagtgagtttggttgtataatttctgcttgtagacaattgttacaaaatagatttcagaactctcatgtcgatttcaataagaggtaagt |
6969651 |
T |
|
| Q |
295 |
aaatagggtagctcacaaggtagctcaggcagcc |
328 |
Q |
| |
|
|||| |||| |||||| || |||||||| ||||| |
|
|
| T |
6969652 |
aaatggggtcgctcacgagttagctcagacagcc |
6969685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 37836633 - 37836557
Alignment:
| Q |
140 |
aatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttgg |
216 |
Q |
| |
|
||||| ||||| | |||||||| |||||| ||||||||||| || ||||| | ||||||||| |||||||||||| |
|
|
| T |
37836633 |
aatgtggatttcgctcttgattctaaaagagttgttgattgtataaattcacatatagatgatagtagcgagtttgg |
37836557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 41316215 - 41315880
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
41316215 |
tagggatgatgatggtgcttttgtacttgcaagaacagaatggtttgcccctatttgtgatatagatgtgggggaagctgttggactacacacggctttg |
41316116 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
41316115 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
41316016 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
41316015 |
ttggatgtattatcactacttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga |
41315916 |
T |
|
| Q |
313 |
ggtagctcaggc-agcctgtctaatcctagccccca |
347 |
Q |
| |
|
| || ||||||| | ||| |||||| |||||||||| |
|
|
| T |
41315915 |
gttaactcaggcaaccctatctaatactagccccca |
41315880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 28590302 - 28589967
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||| |||||||||||| | ||||||||||||||| |||||| | |||||| ||||||| || || |
|
|
| T |
28590302 |
tagggatgatgatggtgcttttgtacttgcaagaacaaaatggtttgcccatatttgtgatatagatgcgggggaagctgttggactacacacgactttg |
28590203 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
28590202 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaagttgttgattgtgtcaattctagtctagaagatagtagcgagt |
28590103 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
28590102 |
ttggatgtattatcactgcttgtaaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga |
28590003 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28590002 |
gttagctcaggcagccctatctaatcctagccccca |
28589967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 10977518 - 10977853
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||| ||||| | | ||| | || |
|
|
| T |
10977518 |
tagggatgatgatggtgcgtttgttcttgcaagaacatgatggttttcccctctttgtgatgtagatgtgggagaggcggttggatagtatacaaccttg |
10977617 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| || || | |
|
|
| T |
10977618 |
gattggatctctaatcaacaatttgataatgtcgattttgtacttgattgtaaaataattgttgattgtgtcaattctagtttagatgatagcagtgatt |
10977717 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || |||| |||||||||||||||||||||| || |||||||| |||||||||||| || | |
|
|
| T |
10977718 |
ttggatgtattattgctgcttgtaaacaactgctagagaatagattccagaactctcatgttgagttcaacatgaggcaagtaaatagggtagcccatga |
10977817 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
10977818 |
gctagctcaggtagccctgtctaatcctagccccca |
10977853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 30304582 - 30304917
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
30304582 |
tagggatgatgatggcgcttttgtacttgcaagaacagaatggtttgcccctatttgtgatatagatgtgggggaagctgttggactacacacggctttg |
30304681 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
30304682 |
gattggctctctaatcaaaaatttgataatgtagattttgtgctggattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
30304781 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
30304782 |
ttggatgtattatcactgcttgtaaacagctgctagttgatagttttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacga |
30304881 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
30304882 |
gttagctcaggcagccctatctaatcctagccccca |
30304917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 24870190 - 24870519
Alignment:
| Q |
12 |
atagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctct |
111 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| || | |
|
|
| T |
24870190 |
atagggatgatgatggtatttttgttcttgtaagaacagaatggtttgcccctctttgtgatatagatttgggggaggctgttggactacacacaacttt |
24870289 |
T |
|
| Q |
112 |
ggattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgag |
211 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24870290 |
ggattggctctctaatcaatagtttgacaatgtcgattttgctcttgattgtaaaagggttgttgattgtgtcaattctagtttagatgatagtagcgag |
24870389 |
T |
|
| Q |
212 |
tttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcaca |
311 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||||| || |||||| |||||||| |||| ||| |
|
|
| T |
24870390 |
tttgaatgtattatcactgcttgtaaacagctgctagtagatagatttcagaactctcaagttgagttcaacagaaggcaaacaaataggatagcacacg |
24870489 |
T |
|
| Q |
312 |
aggtagctcaggcag-cctgtctaatccta |
340 |
Q |
| |
|
|| ||||||| |||| ||||||||| |||| |
|
|
| T |
24870490 |
agttagctcaagcagccctgtctaacccta |
24870519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 24275003 - 24275338
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||| |||||||||||||| |||||||||||| ||||||||| | |||||| ||||||| ||| || |
|
|
| T |
24275003 |
tagggatgatgatggtgcttctgtacttgcaagaacataatggtttgcccctatttgtgatataggtgtgggggaagctgttggactacacacggctttg |
24275102 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
24275103 |
gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
24275202 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||| || |||||||||| |||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
24275203 |
ttggatgttttatcactgcttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacga |
24275302 |
T |
|
| Q |
313 |
ggtagctcaggca-gcctgtctaatcctagccccca |
347 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
24275303 |
gttagctcaggcatccctatctaatcctagccccca |
24275338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 24387210 - 24386875
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||| |||||||||||||| |||||||||||| ||||||||| | |||||| ||||||| ||| || |
|
|
| T |
24387210 |
tagggatgatgatggtgcttctgtacttgcaagaacataatggtttgcccctatttgtgatataggtgtgggggaagctgttggactacacacggctttg |
24387111 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
24387110 |
gattggctctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
24387011 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||| || |||||||||| |||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
24387010 |
ttggatgttttatcactgcttgtaaacaactgctagttgataaatttcagaacactcatgttgagttcagtcgaaggcaagcaaataaggtagctcacga |
24386911 |
T |
|
| Q |
313 |
ggtagctcaggca-gcctgtctaatcctagccccca |
347 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
24386910 |
gttagctcaggcatccctatctaatcctagccccca |
24386875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 307
Target Start/End: Complemental strand, 8703803 - 8703550
Alignment:
| Q |
56 |
tttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaacattttgataat--gtagattttgt |
153 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||||||||| || ||||| || |||||| | | ||||||||||| ||||| ||| || ||||||| |
|
|
| T |
8703803 |
tttgccgctctttgtgatattgacgtaggggaggttgttggattgcacacgactttggattcgatttctaatcaacagtttgacaatatgttgattttgc |
8703704 |
T |
|
| Q |
154 |
tcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgcttgtaaacagctgctagtatat |
253 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||| | | ||||||| || ||| ||||| |||| ||| ||||||||||||| || |||| || |
|
|
| T |
8703703 |
acttgattgtaaaagagttgttgatagtgtcaattcaaacattgatgatagtaccgaatttgggtgtaatattcctgcttgtaaacagttgatagtgaat |
8703604 |
T |
|
| Q |
254 |
tgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagct |
307 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||||||||| |||||||||||| |
|
|
| T |
8703603 |
agatttcggaactctcatgttgtgttcaacacgaggcaagcgaatagggtagct |
8703550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 26731221 - 26730886
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
26731221 |
tagggatgatgatggtgtttttgtacttgcaagaacataatggtttgcccctatttgtgatatagatgtgggggaagctgttggactacacacggctttg |
26731122 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
26731121 |
gattgactctctaatcaacagtttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
26731022 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
26731021 |
ttggatgtattatcactacttgtaaacagctactagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagcacacga |
26730922 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
26730921 |
gttagctcaggcagccctatctaatcctagccccca |
26730886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 47704085 - 47703750
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
47704085 |
tagggatgataatggtgcttttgtacttgcaagagcagaatggtttgcccctatttgtgatatagatgtgggggaagctgttggactacacacggctttg |
47703986 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
47703985 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgtaaaaaggttgttgattgtgtcaattctagtctagaagatagtagcgagt |
47703886 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||| | |
|
|
| T |
47703885 |
ttggatgtattatcaccgcttgtaaacagctgctagttgatagatttcagaactctcatgttgagttatgccggaggcaagcaaatagggtagctcacga |
47703786 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| | ||||||||||||||| |
|
|
| T |
47703785 |
gttagctcaggcagccctatataatcctagccccca |
47703750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 1017976 - 1017641
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||| | ||| || ||||||| ||| || |
|
|
| T |
1017976 |
tagggatgatgatggtgcttttgtacttgcaagaacaaaatagtttgcccctatttgtgatatagatgtgggggaagctgtgggactacacacggctttg |
1017877 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| ||| |||| |||||||| |
|
|
| T |
1017876 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgaaaaaaggttgttaattgtgtcaattctagtctagcggatagtagcgagt |
1017777 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
1017776 |
ttggatgtattattactgcttgtaaacatatgctagttgatagatttcagaactctcatgttgagttcaaccggaggcaagcaaatagggtagctcacga |
1017677 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
1017676 |
gttagctcagacagccctatctaatcctagccccca |
1017641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 325
Target Start/End: Complemental strand, 10346821 - 10346521
Alignment:
| Q |
25 |
tggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctct |
124 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||||| ||| ||| | |||||| || |||||||| ||||| |
|
|
| T |
10346821 |
tggtgtttttgttcttgcaaagacggaatggtttgctcctctctgtgatatagatgtaggggaggctgtcggtatgcacacaactttggattggatctct |
10346722 |
T |
|
| Q |
125 |
aatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtatta |
224 |
Q |
| |
|
|||||||| ||||||||||| | |||| ||||| |||||||| ||||||||||| |||||| | | ||||||||| |||||| ||||||||||||| |
|
|
| T |
10346721 |
aatcaacaatttgataatgtgaactttgcacttgactgtaaaagagttgttgattgtgtcaattaaaatatagatgatagtagcgaatttggatgtatta |
10346622 |
T |
|
| Q |
225 |
tcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggc |
324 |
Q |
| |
|
| | | ||||||| || || |||| || ||||||||||||| ||||| ||||||| || ||||||||| |||||||| |||||| || |||||||||| |
|
|
| T |
10346621 |
ttactacttgtaaccaaatgttagtggatagatttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagctcaggc |
10346522 |
T |
|
| Q |
325 |
a |
325 |
Q |
| |
|
| |
|
|
| T |
10346521 |
a |
10346521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 296
Target Start/End: Complemental strand, 4525641 - 4525498
Alignment:
| Q |
155 |
cttgattgtaaaagggttgttgattggatcaat--tctagtttagatgataatagcgagtttggatgtattatcattgcttgtaaacagctgctagtata |
252 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| | |||||||||||||| || || ||||| |||||||| |||||||||||||||||| ||||| | |
|
|
| T |
4525641 |
cttgattgtaaaaaagttgttgattgtgtcaatagtatagtttagatgatagtattgaatttgggtgtattattattgcttgtaaacagctgttagtaga |
4525542 |
T |
|
| Q |
253 |
ttgatttcagaactctcatgttgagttcagcaagaggcaagcaa |
296 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4525541 |
taaatttcagaactctcatgttgagttcagcaagaggcaagcaa |
4525498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 20223176 - 20223246
Alignment:
| Q |
276 |
agttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcag-cctgtctaatcctagcccc |
345 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| || ||||| ||| || |||||||||||||| |||| |
|
|
| T |
20223176 |
agttcagcagaaggcaagcaaataggatagctcacgagttagctaaggtagccctgtctaatcctaacccc |
20223246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 255715 - 255381
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| | |||||| ||||||| ||| || |
|
|
| T |
255715 |
tagggatgatgatggtgcttttgtacttgcaagaacgtaatggtttgcccctatttgtgatatagatgtgggggaagctgttggactacacacggctttg |
255616 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
255615 |
gattggctctctaatcaacaatttgataatgtagattttgttcttgattgcaaaa-ggttgttgattatgtcaattctagtctagaagatagtagcgagt |
255517 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
255516 |
ttggatgtattatcactgcttgtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggtagctcacgg |
255417 |
T |
|
| Q |
313 |
ggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
255416 |
gttagctcaggcagccctatctaatcctagccccca |
255381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 76 - 353
Target Start/End: Original strand, 32899727 - 32900005
Alignment:
| Q |
76 |
agatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgtt |
175 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32899727 |
agatgtggggaaggttgttggtctacacaaagctttggattgactttctaatcaacagtttgataatgtagattttgttcttgattgtaaaaggattgtt |
32899826 |
T |
|
| Q |
176 |
gattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttg |
275 |
Q |
| |
|
||||| |||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
32899827 |
gattgcgtcaactctagtttagatgatagtagcaagtttggatgtattatcactgcttgtaaacagttgctagtagatagatttcagaactctcatgttg |
32899926 |
T |
|
| Q |
276 |
agttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcag-cctgtctaatcctagcccccacgttat |
353 |
Q |
| |
|
|||||| || ||| ||| |||||||||||| |||| || ||||||| |||| ||||||||||| |||||||||| |||| |
|
|
| T |
32899927 |
agttcaccaggagacaatcaaatagggtagttcacgagttagctcatgcagccctgtctaatcatagcccccacattat |
32900005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 13104708 - 13104384
Alignment:
| Q |
23 |
gatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctct |
122 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||| |||| ||| |||||| ||| ||||||| |||| |
|
|
| T |
13104708 |
gatggtgcttttgttcttgcaagaacataatgatttacccgtctttgtgatatagatgtcggggacgttgatggactacaca--gctttggattgactct |
13104611 |
T |
|
| Q |
123 |
ctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtat |
222 |
Q |
| |
|
|||||||||| ||||| ||| | ||||||||| |||||||||||||| || ||| ||| ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
13104610 |
ctaatcaacagtttgacaatctcgattttgttattgattgtaaaaggattcttggttgtgacaattctagcttagatgatagtagcgagtttggatgtat |
13104511 |
T |
|
| Q |
223 |
tatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggc-aagcaaatagggtagctcacaaggtagctca |
321 |
Q |
| |
|
||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| || ||||||| |
|
|
| T |
13104510 |
tatcactgcttgtaaacagctggtagtagatagatttcagaactctcatgttgagttcaacaagaggcaaagcaagtagggtagctcacgagttagctca |
13104411 |
T |
|
| Q |
322 |
ggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
| ||| ||||||||||| ||||||||| |
|
|
| T |
13104410 |
gacagccctgtctaatcttagccccca |
13104384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 136 - 344
Target Start/End: Original strand, 11657519 - 11657727
Alignment:
| Q |
136 |
tgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgcttgt |
235 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||||| |||| |||| || | |||||||||||||||||| |||||| |
|
|
| T |
11657519 |
tgataatgtagattttattctcgattgtaaaaaggttggtgattgtgtcaattctagtctagaagatagtatcaagtttggatgtattatcactgcttg- |
11657617 |
T |
|
| Q |
236 |
aaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcag-cctgtcta |
334 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||| || ||| |||| |
|
|
| T |
11657618 |
aaacagctgctagttgatagatttcagaactctcatgttgagttcagccggaggcaagcaaatagggtagctcacgagttagcttaggtagccctatcta |
11657717 |
T |
|
| Q |
335 |
atcctagccc |
344 |
Q |
| |
|
|||||||||| |
|
|
| T |
11657718 |
atcctagccc |
11657727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 27862403 - 27862134
Alignment:
| Q |
32 |
tttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaac |
131 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| ||| |||| ||||| ||||||||||| || || ||||| | |||||| |||||||||||| |
|
|
| T |
27862403 |
tttgttcttgcaagaacggaatagtttgcccctctttgcgatgtagaggtgggagaggttgttggcttgcatacagccttagattggatctctaatcaac |
27862304 |
T |
|
| Q |
132 |
attttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgc |
231 |
Q |
| |
|
| ||||||||| | ||||||| ||||||||| |||| ||||||||||| ||||||||||| || ||||| ||| | |||||||| | ||| |
|
|
| T |
27862303 |
aatttgataatatcaattttgtacttgattgtcaaagagttgttgattgtgtcaattctagt--------tagcagcgaatttaggtgtattattactgc |
27862212 |
T |
|
| Q |
232 |
ttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctca |
309 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
27862211 |
ttgtaaatagctgctagaggatagatttcagaactctcatgttgagttcaacaggaggcaaataaatagggtagctca |
27862134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 32895780 - 32895846
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgt |
81 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
32895780 |
tagggatgaggatggtgcttttgtgcttgcaataacataatggtttgtccctc--tgtgatatagatgt |
32895846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 38 - 347
Target Start/End: Original strand, 9451245 - 9451556
Alignment:
| Q |
38 |
cttgcaagaacagaatggtttgcccctctttgtgatatagatgtgg-gggaggttgttggtttacacacagctctggattggctctctaatcaacatttt |
136 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||| | ||||||||| || |||||||| |||||||||||| ||| |
|
|
| T |
9451245 |
cttgcaagaacgaaatggtttgcccctctttatgatatagatgtggagggaggctgttcgattacacacaactttggattggatctctaatcaaccgttt |
9451344 |
T |
|
| Q |
137 |
gataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgcttgta |
236 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| || || ||||| |||||||| | |||||||| |
|
|
| T |
9451345 |
gacaatgtcgattttgttcttgattgtaaaagagttgttgattgtgtcaattctagcttagatgatagaagtgaatttgggtgtattattactgcttgta |
9451444 |
T |
|
| Q |
237 |
aacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcag-cctgtctaa |
335 |
Q |
| |
|
|||| | ||| ||| || ||||||||||||||||| | ||||||| || ||| ||| ||||||||||||||||| || || |||||||| ||||||||| |
|
|
| T |
9451445 |
aacaacggctggtagatagatttcagaactctcatatcgagttcaacaggagacaaacaaatagggtagctcacgagttaaatcaggcagccctgtctaa |
9451544 |
T |
|
| Q |
336 |
tcctagccccca |
347 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9451545 |
tcctagccccca |
9451556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 12129270 - 12129587
Alignment:
| Q |
13 |
tagggatgaggatggtggttttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctg |
112 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||| ||||||||| |||| |||||| ||||||||||||||| | |||||| ||||||| || || |
|
|
| T |
12129270 |
tagggatgatgatggtgcttttgtacttgcaagaacataatggtttgtccctatttgtgttatagatgtgggggaagctgttggactacacacgactttg |
12129369 |
T |
|
| Q |
113 |
gattggctctctaatcaacattttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagt |
212 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||| |
|
|
| T |
12129370 |
gattggctctctaatcaacaatttcataatgtagattttgttcttgattgt------------------gtcaattctagtctagaagatagtagcgagt |
12129451 |
T |
|
| Q |
213 |
ttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaa |
312 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| || ||||||| |||| ||| |||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
12129452 |
ttggatgtattatcactgcttgtaaacaactgctagttgatagatttcaaaactttcacgttgagttcagccgaaggcaagcaaatagggtagctcacga |
12129551 |
T |
|
| Q |
313 |
ggtagctcaggcagcc-tgtctaatcctagccccca |
347 |
Q |
| |
|
| ||||||||| |||| | ||| ||||||||||||| |
|
|
| T |
12129552 |
gttagctcaggtagccttatctgatcctagccccca |
12129587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 17852297 - 17852440
Alignment:
| Q |
205 |
tagcgagtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggta |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17852297 |
tagcgagtttggatgtattatcactgcttgtaaacagctgctagttgatagatttcagaattctcatgttgagttcagccggaggcaagcaaatagggta |
17852396 |
T |
|
| Q |
305 |
gctcacaaggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
|||||| || |||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
17852397 |
gctcacgagttagctcaggcagccctatctaatcttagccccca |
17852440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 328
Target Start/End: Original strand, 20492362 - 20492556
Alignment:
| Q |
134 |
tttgataatgtagattttgttcttgattgtaaaagggttgttgattggatcaattctagtttagatgataatagcgagtttggatgtattatcattgctt |
233 |
Q |
| |
|
||||||||| | ||||||| ||| |||| ||||| |||||||||| || ||||| | |||||||| |||||||| |||| |||||||| || || |
|
|
| T |
20492362 |
tttgataatatggattttgctctcgattccaaaagagttgttgattttataaattcacatgtagatgatgatagcgagcttggttgtattatatctgttt |
20492461 |
T |
|
| Q |
234 |
gtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggtagctcacaaggtagctcaggcagcc |
328 |
Q |
| |
|
|||||| | | |||| || ||||| ||||||||||| | ||||| | | ||||||||| |||||||| |||||| | |||||||||||||| |
|
|
| T |
20492462 |
gtaaacggttattagttaatagattttagaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagctcaggcagcc |
20492556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0151 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 21508 - 21366
Alignment:
| Q |
205 |
tagcgagtttggatgtattatcattgcttgtaaacagctgctagtatattgatttcagaactctcatgttgagttcagcaagaggcaagcaaatagggta |
304 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||| || || | || |||||||||| |||||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
21508 |
tagcgaatttggatgtatcatttttgcttgcaaacagttgttaatggatagatttcagaa-tctcatgtcgagttcaacaggaggcaaggaaatagggta |
21410 |
T |
|
| Q |
305 |
gctcacaaggtagctcaggcag-cctgtctaatcctagccccca |
347 |
Q |
| |
|
||||| ||| ||||||| | || ||| ||||||||||||||||| |
|
|
| T |
21409 |
gctcataagttagctcaagtagccctatctaatcctagccccca |
21366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0151; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 21621 - 21511
Alignment:
| Q |
32 |
tttgttcttgcaagaacagaatggtttgcccctctttgtgatatagatgtgggggaggttgttggtttacacacagctctggattggctctctaatcaac |
131 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||| ||||| || ||||||| |||||| || |||||| || || ||||| ||||||| ||| |
|
|
| T |
21621 |
tttgttcttgcaaaaacggaatggttcgcccctctttgtgacatagacgtaggggaggctgttgggttgcacacaactttgaattggatctctaaccaaa |
21522 |
T |
|
| Q |
132 |
attttgataat |
142 |
Q |
| |
|
| ||||||||| |
|
|
| T |
21521 |
aatttgataat |
21511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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