View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19286_high_5 (Length: 342)
Name: NF19286_high_5
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19286_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1868434 - 1868232
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
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||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
1868434 |
ttatttgagagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctag |
1868335 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggttgccttgtttagctgatcttgtgtgaatatttta |
200 |
Q |
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|| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1868334 |
aagtcctttgaaaacggtaccaaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatatttta |
1868235 |
T |
|
| Q |
201 |
gca |
203 |
Q |
| |
|
||| |
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|
| T |
1868234 |
gca |
1868232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1842825 - 1842625
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
| |
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||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
1842825 |
ttatttgagagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctag |
1842726 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggttgccttgtttagctgatcttgtgtgaatatttta |
200 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
1842725 |
aaatcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatatttta |
1842626 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
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|
| T |
1842625 |
g |
1842625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1856839 - 1856695
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
| |
|
|||||||||||| |||| | |||||||| |||||||| | ||||||||| | |||||| |||| ||||||||||||||||||||||| |||||||| || |
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| T |
1856839 |
ttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaag |
1856740 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaa |
145 |
Q |
| |
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|||||| || | ||||||||||| ||||| || |||||||| |
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| T |
1856739 |
ttcccctttgtaaactgtaccaaaacctcctttacctatgattaa |
1856695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 1842580 - 1842532
Alignment:
| Q |
270 |
aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1842580 |
aaaatcagaccaccattctgctcaaagaatttctctttcattttgatga |
1842532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 1816205 - 1816364
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
| |
|
|||||||||||| |||| | ||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||| |||||||| |||||||| || |
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| T |
1816205 |
ttatttgagagacaacatccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaag |
1816304 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtt |
160 |
Q |
| |
|
||||||||| | ||||||||||| ||| | || |||||||| |||| |||||||| |
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|
| T |
1816305 |
ttcccctttgaaaactgtaccaaaacctcctctacctatgattaagctctcatcaaagtt |
1816364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 1868165 - 1868117
Alignment:
| Q |
270 |
aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
318 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
1868165 |
aaaatcaaaccaccattctgttcgaagaatttctctttcattttgatga |
1868117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9156118 - 9156283
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
| |
|
||||||| || || |||||||||||||| || || || | |||||| || ||||||||||||||| ||||| | |||||| ||| | || || || |
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| T |
9156118 |
ttatttgggataggacaactacctcattaataaactgctcgatttgatttgcatctattatttttgatttttttacagcaacgattttgttgtcgggtaa |
9156217 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtttttggt |
166 |
Q |
| |
|
|| |||||||||| | ||||||||||| ||| ||||||||||||| || || || |||||||||| |
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|
| T |
9156218 |
aactcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggt |
9156283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 9118422 - 9118278
Alignment:
| Q |
1 |
ttatttgagagagaacaactacctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctag |
100 |
Q |
| |
|
||||||| || |||| |||||||||||| |||||||| | |||||| || ||||||||| | |||||||||| ||| || ||||| ||||| || |
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| T |
9118422 |
ttatttgggacagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatcgggtaa |
9118323 |
T |
|
| Q |
101 |
aaatcctttgaaagcagtaccaaaaccacctttgccaatgattaa |
145 |
Q |
| |
|
|| |||||||||| ||||| ||||| ||| | ||||||||||| |
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|
| T |
9118322 |
aactcctttgaaaattgtaccgaaacctcctcttccaatgattaa |
9118278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 37567761 - 37567622
Alignment:
| Q |
21 |
acctcattgatgaattgattgatttggcttctatctattatttttgactttttgatagcaacaattcttttatcatctagaaatcctttgaaagcagtac |
120 |
Q |
| |
|
|||||||| |||||||| | |||||||| ||||||| |||| || ||||||||||||||| |||| ||||||||||| ||||||||| | |||| |
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| T |
37567761 |
acctcattaatgaattgttcattttggctttcatctattgttttggattttttgatagcaacagttctattatcatctagtttccctttgaaaactgtac |
37567662 |
T |
|
| Q |
121 |
caaaaccacctttgccaatgattaaattctcgtcaaagtt |
160 |
Q |
| |
|
||||||| ||| | || ||| |||| ||||| |||||||| |
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|
| T |
37567661 |
caaaacctcctctacctatggttaagttctcatcaaagtt |
37567622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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