View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19286_high_7 (Length: 335)
Name: NF19286_high_7
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19286_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 38180703 - 38180399
Alignment:
| Q |
1 |
catacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180703 |
catacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttaca |
38180604 |
T |
|
| Q |
101 |
cactcgccttaccaacaaatcaaccatcccgggcctatgctactccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagacttt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180603 |
cactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagacttt |
38180504 |
T |
|
| Q |
201 |
gtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180503 |
gtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcct |
38180404 |
T |
|
| Q |
301 |
acggt |
305 |
Q |
| |
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||||| |
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| T |
38180403 |
acggt |
38180399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 38185372 - 38185068
Alignment:
| Q |
1 |
catacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
38185372 |
catacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttaca |
38185273 |
T |
|
| Q |
101 |
cactcgccttaccaacaaatcaaccatcccgggcctatgctactccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagacttt |
200 |
Q |
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|||| |||||| ||||||| |||||||||| ||||| | || | ||||||||||||| ||| ||||||| || ||| |||||||||||||||||||| |
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| T |
38185272 |
cactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagacttc |
38185173 |
T |
|
| Q |
201 |
gtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcct |
300 |
Q |
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|| ||||| || ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38185172 |
atcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcct |
38185073 |
T |
|
| Q |
301 |
acggt |
305 |
Q |
| |
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||||| |
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| T |
38185072 |
acggt |
38185068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38170889 - 38170594
Alignment:
| Q |
1 |
catacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttaca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |
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| T |
38170889 |
catacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttata |
38170790 |
T |
|
| Q |
101 |
cactcgccttaccaacaaatcaaccatcccgggcctatgctactccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagacttt |
200 |
Q |
| |
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|| |||||||| ||||||| |||||||||||||||| | || | ||||||||||||||||| | ||||| || | ||||| | || |||||||| | |
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| T |
38170789 |
cagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacgaagacatc |
38170690 |
T |
|
| Q |
201 |
gtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgctta |
296 |
Q |
| |
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||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||||||||||||||| |
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| T |
38170689 |
gtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttgctta |
38170594 |
T |
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