View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19286_low_2 (Length: 257)

Name: NF19286_low_2
Description: NF19286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19286_low_2
NF19286_low_2
[»] chr6 (12 HSPs)
chr6 (53-209)||(1842190-1842346)
chr6 (77-219)||(6473451-6473593)
chr6 (77-239)||(1828269-1828440)
chr6 (125-239)||(1827381-1827495)
chr6 (153-239)||(1839276-1839362)
chr6 (77-239)||(6525999-6526159)
chr6 (78-123)||(1822452-1822497)
chr6 (153-239)||(1832177-1832263)
chr6 (91-219)||(6505122-6505250)
chr6 (159-219)||(6457083-6457143)
chr6 (159-219)||(6465043-6465103)
chr6 (91-124)||(6516610-6516643)
[»] chr7 (2 HSPs)
chr7 (77-238)||(46383048-46383210)
chr7 (159-238)||(46383722-46383801)
[»] chr1 (1 HSPs)
chr1 (77-126)||(35244497-35244546)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 1842346 - 1842190
Alignment:
Q  53 aactctttctcataaatatttcctccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatatt 152  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1842346 aactctttctcatacatatttcctccacatttttgcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatatt 1842247  T
Q  153 ataccaatcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttga 209  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1842246 atacgaatcaaggctgcagaatagtatgcattcacgacttcgctagtgctctcttga 1842190  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 6473593 - 6473451
Alignment:
Q  77 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatag 176  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | ||||  |||||  |||| |  |||   ||||| ||||| ||||||||||||    
T  6473593 ccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgcagaatag 6473494  T
Q  177 tatgcattcacgaattcgctagtgctctcttgatttcttccat 219  Q
    ||||||||||||  ||| ||||| |||||||| ||||||||||    
T  6473493 tatgcattcacggcttcactagtactctcttggtttcttccat 6473451  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 1828440 - 1828269
Alignment:
Q  77 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattata---------ccaatcaaggct 167  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||| |||||| | |||  ||||||| ||||  |||         ||||||||||||    
T  1828440 ccacattttagcagcaagaacttccaatgacgcaagtgttgatgcaacggctgcgaattccgcatcttcatataccatagtaaccataccaatcaaggct 1828341  T
Q  168 gcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccct 239  Q
    || |||||||||||||||||    || |||||||||||||||||||| |||| || |||||| |||||||||    
T  1828340 gcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccct 1828269  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 1827495 - 1827381
Alignment:
Q  125 ggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccattagtg 224  Q
    |||||| |||||| ||||||| ||||  |||  |||||||||||||||||| ||||||||||    ||| |||| |||||||||||||||||||| ||||    
T  1827495 ggctgcgagttcagcatcttcatataccatagtaatcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtg 1827396  T
Q  225 aattcagttagccct 239  Q
    |||||||||||||||    
T  1827395 aattcagttagccct 1827381  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 1839362 - 1839276
Alignment:
Q  153 ataccaatcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccct 239  Q
    ||||||||||| |||| ||||||||||||||||||  |||| |||||||| ||||||||||| |||| || ||| || |||||||||    
T  1839362 ataccaatcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccct 1839276  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 239
Target Start/End: Original strand, 6525999 - 6526159
Alignment:
Q  77 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatag 176  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||| | ||||| |||||  |||| || |||   || || ||||||||||| | |||     
T  6525999 ccacattttagcagcaagaatttcaaatgatgcaagtgtcgatgcagtcgctgcgagttctgcatcgtcgtatgccattcccatcaaggctgc-gcataa 6526097  T
Q  177 tatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccct 239  Q
    || |||||| |   ||| || || ||||||||||||||||||| ||||||||| |||||||||    
T  6526098 taagcattc-cagcttcactggtactctcttgatttcttccatcagtgaattctgttagccct 6526159  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 1822497 - 1822452
Alignment:
Q  78 cacattttagcagcaagaatttccaatgatgtaagtgttgatgcaa 123  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1822497 cacattttagcagaaagaatttccaatgatgtaagtgttgatgcaa 1822452  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 1832263 - 1832177
Alignment:
Q  153 ataccaatcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccct 239  Q
    |||||| |||||||||||||||| ||||||||||    ||| |||||| ||||||| |||||||||| |||||||||| ||| ||||    
T  1832263 ataccagtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatcagtgaattcacttacccct 1832177  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 6505122 - 6505250
Alignment:
Q  91 caagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaatagtatgcattcacgaa 190  Q
    ||||||||||||||||||| ||||||||| ||||||   |||||| |  |||  | |||  ||| || ||||| ||||||| |||||||||||||||       
T  6505122 caagaatttccaatgatgttagtgttgatccaatggacacaagttgagaatcaccatatgctattcccatcaatgctgcagcatagtatgcattcacagc 6505221  T
Q  191 ttcgctagtgctctcttgatttcttccat 219  Q
    ||| ||||| ||||||||||| |||||||    
T  6505222 ttcactagtactctcttgattccttccat 6505250  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 6457083 - 6457143
Alignment:
Q  159 atcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccat 219  Q
    ||||| ||||||| |||||||||||||||   ||| ||||| |||||||||||||||||||    
T  6457083 atcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgatttcttccat 6457143  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 6465043 - 6465103
Alignment:
Q  159 atcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccat 219  Q
    ||||| ||||| |||||||||||||||||   ||| ||||| |||||||||||||||||||    
T  6465043 atcaaagctgctgaatagtatgcattcacagcttcactagtactctcttgatttcttccat 6465103  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 6516643 - 6516610
Alignment:
Q  91 caagaatttccaatgatgtaagtgttgatgcaat 124  Q
    ||||||||||||||||||| ||||||||||||||    
T  6516643 caagaatttccaatgatgttagtgttgatgcaat 6516610  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 46383048 - 46383210
Alignment:
Q  77 ccacattttagcagcaagaatttccaa-tgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattataccaatcaaggctgcagaata 175  Q
    ||||||||||||||||||||||||||| || ||||||||| || ||| | ||| | |||||  |||| || |||   ||||  ||||| |||||||||||    
T  46383048 ccacattttagcagcaagaatttccaaatggtgtaagtgtcgaagcagttgctacgagttctgcatcgtcatatgcaatactgatcaaagctgcagaata 46383147  T
Q  176 gtatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccc 238  Q
    |||||||||||    ||| ||||| |||| |||||||||||||| ||||||||||||||||||    
T  46383148 gtatgcattcaaagtttcactagtactcttttgatttcttccatcagtgaattcagttagccc 46383210  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 46383722 - 46383801
Alignment:
Q  159 atcaaggctgcagaatagtatgcattcacgaattcgctagtgctctcttgatttcttccattagtgaattcagttagccc 238  Q
    |||||||||||||||| |||||||||||  | ||| ||||  |||||| ||||||||| || ||||||||||||||||||    
T  46383722 atcaaggctgcagaattgtatgcattcaaaacttcactagcactctctcgatttcttcaatcagtgaattcagttagccc 46383801  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 35244546 - 35244497
Alignment:
Q  77 ccacattttagcagcaagaatttccaatgatgtaagtgttgatgcaatgg 126  Q
    ||||| ||||||||||  |||||||||||||| |||||||||| ||||||    
T  35244546 ccacaatttagcagcacaaatttccaatgatgcaagtgttgatccaatgg 35244497  T

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