View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_high_13 (Length: 240)
Name: NF19287_high_13
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12996281 - 12996501
Alignment:
| Q |
1 |
cttatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagt |
100 |
Q |
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| T |
12996281 |
cttatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagt |
12996380 |
T |
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| Q |
101 |
ttacacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcg |
200 |
Q |
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| T |
12996381 |
ttacacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcg |
12996480 |
T |
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| Q |
201 |
ttcacaaacacctgcggttac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
12996481 |
ttcacaaacacctgcggttac |
12996501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13070933 - 13071153
Alignment:
| Q |
1 |
cttatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagt |
100 |
Q |
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| T |
13070933 |
cttatctggtggagcttatatacctacctttttgtcttcaaggaacaaaagagaaaccaaacaactagtgttggcaattttttgttaagtattctttagt |
13071032 |
T |
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| Q |
101 |
ttacacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcg |
200 |
Q |
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| T |
13071033 |
ttacacttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcg |
13071132 |
T |
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| Q |
201 |
ttcacaaacacctgcggttac |
221 |
Q |
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| T |
13071133 |
ttcacaaacacctgcggttac |
13071153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 28138293 - 28138401
Alignment:
| Q |
106 |
cttacatgttgtgcatgaacaatgaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcgttcac |
205 |
Q |
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|||||||||| ||||| || | |||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
28138293 |
cttacatgttatgcataaagagtgaatgataagctctggcagagacaatcctgactttgattctgttctctggatcccagttcaagaattgatcattcac |
28138392 |
T |
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| Q |
206 |
aaacacctg |
214 |
Q |
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||| ||||| |
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| T |
28138393 |
aaaaacctg |
28138401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 51935589 - 51935666
Alignment:
| Q |
129 |
gaatggtatgctctggctgatacaattctgactttgattctgttctctggatcccaattcaagaattggtcgttcaca |
206 |
Q |
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||||| || ||||| || ||||| |||| |||||||||||||| |||||||||||||||| ||||| || |||||| |
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| T |
51935589 |
gaatgataagctcttgcagatactattcggactttgattctgtgttctggatcccaattcagaaattgatcattcaca |
51935666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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