View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_high_6 (Length: 342)
Name: NF19287_high_6
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 37319934 - 37320259
Alignment:
| Q |
18 |
gattccatgctacggtccttacatataagctttgaagggtacctggattcaggcatggattgaacattgaccaaatatggaacaacaacataagacatct |
117 |
Q |
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| T |
37319934 |
gattccatgctatggtccttacatataagctttgaagggtacctggattcaggcatggattgaacattgacccaatatggaacaacaacacaagacatca |
37320033 |
T |
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| Q |
118 |
tgagnnnnnnnaataattggagatcacgaaatataaggaaacatgagaaggggaaacaaaaatgtattggatgctcaacccagttttaacggaattcatg |
217 |
Q |
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| T |
37320034 |
tgagtttttttaataatcggagatcatgaaatataaggaaacatgagaaggggaaacaaaactgtattggatgctcaacccagttttaacggaattcatg |
37320133 |
T |
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| Q |
218 |
gggaggttgagggtacctccgtacatgggaattggtccaaatattcctccttcg-nnnnnnnnnncgttgaattaaaactaaaaataaatatattgaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37320134 |
gggaggttgagggtacctccgtacatgggaattggtcaaaatatttctccttcgttttttttcttcgttgaattaaaactaaaaataaatatattgaatt |
37320233 |
T |
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| Q |
317 |
tataaacgaatgtggtattacatgtt |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37320234 |
tataaacgaatgtggtattacatgtt |
37320259 |
T |
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