View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_high_7 (Length: 270)
Name: NF19287_high_7
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 43560855 - 43560605
Alignment:
| Q |
1 |
ttcctccaaaaccaacctaacatttctcatacaaatccaaatgggtcgtcattcatgttgtttaaagcaaaagttgaggaaaggtttatggtcccctgaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560855 |
ttcctccaaaaccaacttaacatttctcatacaaatccaaatgggtcgtcattcatgttgtttaaagcaaaagttgaggaaaggtttatggtcccctgaa |
43560756 |
T |
|
| Q |
101 |
gaagatgaaaagcttttcaatcatataactagatttggtgttggttgctggagttctgttcctaaacaagctggtaagtaatttgttaaaatcatgttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43560755 |
gaagatgaaaagcttttcaatcatataactagatttggtgttggttgctggagttctgttcctaaacaagctggtaagtaa-ttgttaaaatcatgttac |
43560657 |
T |
|
| Q |
201 |
attcttcaaaactaagagtctaacatggttgatgaatttcttcaggacttca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560656 |
attcttcaaaactaagagtctaacatggttgatgaatttcttcaggacttca |
43560605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 51044095 - 51044227
Alignment:
| Q |
45 |
gtcgtcattcatgttgtttaaagcaaaagttgaggaaaggtttatggtcccctgaagaagatgaaaagcttttcaatcatataactagatttggtgttgg |
144 |
Q |
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||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||||| |
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| T |
51044095 |
gtcgtcattcatgttctttaaagcaaaaactaagaaaaggtttatggtcccctgaagaagatgataagcttttcaattacataaccatgtttggtgttgg |
51044194 |
T |
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| Q |
145 |
ttgctggagttctgttcctaaacaagctggtaa |
177 |
Q |
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| T |
51044195 |
atgttggagttcagttcctaaactagctggtaa |
51044227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 34626994 - 34626858
Alignment:
| Q |
41 |
atgggtcgtcattcatgttgtttaaagcaaaagttgaggaaaggtttatggtcccctgaagaagatgaaaagcttttcaatcatataactagatttggtg |
140 |
Q |
| |
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|||||||| |||| |||| |||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||| |
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| T |
34626994 |
atgggtcgccatttttgttctttaaagcaaaaactaagaaaaggtttatggtcccctgaagaagatgagaagcttttcaattacataaccatgtttggtg |
34626895 |
T |
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| Q |
141 |
ttggttgctggagttctgttcctaaacaagctggtaa |
177 |
Q |
| |
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| || || |||||||| ||||||||| ||||||||| |
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| T |
34626894 |
tcggatgttggagttcagttcctaaattagctggtaa |
34626858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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