View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_low_3 (Length: 453)
Name: NF19287_low_3
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 26922195 - 26922625
Alignment:
| Q |
19 |
acatcagggaaacaatggtcggacacgctcttgcagcggaatgcagctctagcgatgctttttccggtttggagaagaaccattgcaaggtctagtgggt |
118 |
Q |
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| T |
26922195 |
acatcagggaaacagtggtcggacacgctcttgcaacggaatgcagctctagcgatgctttttccggtttggagaagaaccattgcagggtctagtgggt |
26922294 |
T |
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| Q |
119 |
ctaaatggaaacatgttttccttaaaaccaagtatctgtaattcacattcataaaattaaaccaagaaatctcagtgaacatttaaacatgtatcgacta |
218 |
Q |
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| T |
26922295 |
ctaaatggaaacatgttttccctaaaaccaagtatgtgtaattcacattcatacaattaaaccaagaaatctcagtgaacatttaaacatgtatcgacta |
26922394 |
T |
|
| Q |
219 |
tcttaatccatattaacttaatcaatagacaagaaattgtaaaaacaatgcctggtatgtgatctaaaaatagaaatagtttgctaccaattggtcttct |
318 |
Q |
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| T |
26922395 |
tcttaatccatattaacttaatcaatagacaagaaattgtaaaaacaatgcctagtatgtgatcttaaaatagaaatagtttgctaccaattggtcttct |
26922494 |
T |
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| Q |
319 |
ttgaataaacgtg--tatatataactttatcgtacattattttgaaatttattggagttttttaaatcaagcattggnnnnnnnnnttgcattagaagct |
416 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26922495 |
ttgaataaacgtgtatatatataactttaacgtacattattttgaaatttaatggagttttttaaatcaagcattgg-aaaaaaaattgcattagtagct |
26922593 |
T |
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| Q |
417 |
ggcaaaaacattaacttaatccctatgctact |
448 |
Q |
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| T |
26922594 |
ggcaaaaacattaacttaatccctatgatact |
26922625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 26976406 - 26976534
Alignment:
| Q |
49 |
ttgcagcggaatgcagctctagcgatgctttttccggtttggagaagaaccattgcaaggtctagtgggtctaaatggaaacatgttttccttaaaacca |
148 |
Q |
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| T |
26976406 |
ttgcagcggaatggagctatggcgaggctttttcacatctggagaatagccactgcattgtccagtaggcctaaatggaaacatgttttccccaaaacca |
26976505 |
T |
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| Q |
149 |
agtatctgtaattcaca-ttcataaaatt |
176 |
Q |
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| T |
26976506 |
agtatctgtaatccacatttcataaaatt |
26976534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 26921866 - 26921810
Alignment:
| Q |
119 |
ctaaatggaaacatgttttccttaaaaccaagtatctgtaattcacattcataaaat |
175 |
Q |
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| T |
26921866 |
ctaaatggaaacatcttttccccaaaaccaaatatatgtaattcacattcattaaat |
26921810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 47058922 - 47058791
Alignment:
| Q |
45 |
gctcttgcagcggaatgcagctctagcgatgctttttccggtttggagaagaaccattgcaaggtctagtgggtctaaatggaaacatgttttccttaaa |
144 |
Q |
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|||| ||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| |||||| | || ||||||| ||||||| || || ||| |
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| T |
47058922 |
gctcctgcagcggaatgcagttcttgctaggctttttccggtttggagaagaattgttgcatggtctaataggcctaaatgaaaacatgcttcccccaaa |
47058823 |
T |
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| Q |
145 |
accaagtatctgtaattcacattcataaaatt |
176 |
Q |
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| T |
47058822 |
accaagtatctgtaattcacattcataaaatt |
47058791 |
T |
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