View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_low_4 (Length: 415)
Name: NF19287_low_4
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 37556096 - 37555716
Alignment:
| Q |
17 |
ataaactttgtcaaacgtacatgtagagtttggttaaacttgagttatcaagtaacacacagagttgaattc-attaactataaatagctaacctgaatg |
115 |
Q |
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| T |
37556096 |
ataaactttgtcaaacgtacatgtagagtttggttaaacttgagttatcaagtaacacacagagttgaattccattaactataaatagctaacctgaatg |
37555997 |
T |
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| Q |
116 |
ggagttcttccattaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactgttgatgtaaaagatatcaggatttg |
215 |
Q |
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| T |
37555996 |
ggagttcttccattaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactattggtgtaaaagatatcaggatttg |
37555897 |
T |
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| Q |
216 |
attcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagcttgtaacttaag |
315 |
Q |
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| T |
37555896 |
attcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagcttgtaacttaag |
37555797 |
T |
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| Q |
316 |
tttgcaatcctgaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttgattcaactattcc |
396 |
Q |
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| T |
37555796 |
tttgcaatcctgaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttgattcaactattcc |
37555716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 15502654 - 15502543
Alignment:
| Q |
195 |
tgtaaaagatatcaggatttgattcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatga |
294 |
Q |
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|||| ||||||||||||| |||||| |||| |||||||||||||| || ||||| ||| |||| ||| || | ||| |||||||||||||| ||||| |
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| T |
15502654 |
tgtagaagatatcaggatctgattctccaatgtcaagtacccattttggcaatgggatgttaacaacatcacctacatttcctccacattgatggaatga |
15502555 |
T |
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| Q |
295 |
cattatagcttg |
306 |
Q |
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||| |||||||| |
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| T |
15502554 |
catgatagcttg |
15502543 |
T |
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