View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19287_low_5 (Length: 382)

Name: NF19287_low_5
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19287_low_5
NF19287_low_5
[»] chr2 (6 HSPs)
chr2 (18-382)||(2808697-2809062)
chr2 (71-135)||(2814047-2814111)
chr2 (335-381)||(34598794-34598840)
chr2 (336-381)||(45128013-45128058)
chr2 (334-382)||(30420483-30420531)
chr2 (337-381)||(36233814-36233858)
[»] chr1 (9 HSPs)
chr1 (336-381)||(7342530-7342575)
chr1 (340-381)||(9919238-9919279)
chr1 (336-375)||(5701065-5701104)
chr1 (336-381)||(31836674-31836719)
chr1 (336-381)||(51871673-51871718)
chr1 (337-381)||(40646497-40646541)
chr1 (338-381)||(45806038-45806081)
chr1 (341-381)||(5324785-5324825)
chr1 (333-381)||(50166326-50166374)
[»] chr4 (8 HSPs)
chr4 (336-382)||(6972626-6972672)
chr4 (336-381)||(5333756-5333801)
chr4 (340-381)||(25273695-25273736)
chr4 (338-381)||(29965493-29965536)
chr4 (335-381)||(31381899-31381945)
chr4 (336-381)||(50766739-50766784)
chr4 (341-381)||(867978-868018)
chr4 (337-381)||(10389981-10390025)
[»] scaffold0426 (1 HSPs)
scaffold0426 (336-381)||(6143-6188)
[»] chr3 (7 HSPs)
chr3 (338-381)||(32607271-32607314)
chr3 (336-382)||(4172368-4172414)
chr3 (335-366)||(2342293-2342324)
chr3 (336-382)||(4178366-4178412)
chr3 (336-382)||(25849623-25849668)
chr3 (336-381)||(38855264-38855309)
chr3 (341-381)||(46934449-46934489)
[»] chr7 (9 HSPs)
chr7 (339-381)||(26492172-26492214)
chr7 (336-381)||(12539183-12539228)
chr7 (336-381)||(23085326-23085371)
chr7 (336-381)||(42311084-42311129)
chr7 (336-372)||(21266196-21266232)
chr7 (341-381)||(22928098-22928138)
chr7 (337-381)||(46821819-46821863)
chr7 (340-382)||(1449056-1449098)
chr7 (336-382)||(26583518-26583564)
[»] chr8 (8 HSPs)
chr8 (336-381)||(9619586-9619631)
chr8 (337-381)||(29777041-29777085)
chr8 (337-372)||(19876029-19876064)
chr8 (346-381)||(33895903-33895938)
chr8 (336-381)||(14907152-14907197)
chr8 (337-381)||(11196704-11196748)
chr8 (349-381)||(11725506-11725538)
chr8 (341-381)||(44100160-44100200)
[»] chr6 (4 HSPs)
chr6 (336-381)||(16418963-16419008)
chr6 (336-381)||(25064039-25064084)
chr6 (336-381)||(8496769-8496814)
chr6 (337-381)||(17334582-17334625)
[»] chr5 (5 HSPs)
chr5 (336-381)||(19281172-19281217)
chr5 (335-372)||(19260045-19260082)
chr5 (336-381)||(42579684-42579729)
chr5 (341-381)||(36344717-36344757)
chr5 (341-381)||(41184672-41184712)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 2809062 - 2808697
Alignment:
Q  18 agactttggtccatgccctacttggttttatgttttgtatgctttggtttgacaaaaataagataattttctcaaaaatttcatattaccctgagtaatt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2809062 agactttggtccatgccgtacttggttttatgttttgtatgctttggtttgacaaaaataagataattttctcaaaaatttcatattaccccgagtaatt 2808963  T
Q  118 catgattagtttaggtaattaagtggatgttattcatactcaactttgcagtgccctcctgcttacttgagtgacactcaaattgaaattctcatcaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2808962 catgattagtttaggtaattaagtggatgttattcatactcaactttgcagtgccctcctgcttacttgagtgacactcaaattgaaattctcatcaagt 2808863  T
Q  218 ggaaacctcctaagttatttcaaaattaatattgatggatccaattacatttatttcggtaactcgtattgt-gtgacctttttcgcgactcaatagtat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||    
T  2808862 ggaaacctcctaagttatttcaaaattaatattgatggatccaattacatttctttcggtaactcctattgtggtgacctttttcgcgacttaatagtat 2808763  T
Q  317 gtttattacatatgtgttttctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||| | ||||| |||||    
T  2808762 gtttattacatatgtgttttctccctctccatcaagtcggccctaattttctttttctaggttttt 2808697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 2814111 - 2814047
Alignment:
Q  71 aaaaataagataattttctcaaaaatttcatattaccctgagtaattcatgattagtttaggtaa 135  Q
    ||||||||||| ||||| | || ||| ||||||||||||||| ||||||||||||||||||||||    
T  2814111 aaaaataagatcattttattaagaatctcatattaccctgagcaattcatgattagtttaggtaa 2814047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 34598794 - 34598840
Alignment:
Q  335 ttctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  34598794 ttctccctctccaacaagccggccctaattttctctctctaggtttt 34598840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 45128013 - 45128058
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  45128013 tctccctctccaataagccggtcctaattttctctctctaggtttt 45128058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 30420483 - 30420531
Alignment:
Q  334 tttctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||||||||| |||||||||||| | |||||||||||| |||||    
T  30420483 tttctccctctccaacaagccggccctagtcttctctctctaggttttt 30420531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 36233814 - 36233858
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| ||| |||||||| |||||||||||||||||||    
T  36233814 ctccctctccaacaagtcggccctagttttctctctctagatttt 36233858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 7342530 - 7342575
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7342530 tctccctctccaataagccggccctaattttctctctctaggtttt 7342575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 9919238 - 9919279
Alignment:
Q  340 cctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  9919238 cctctccaacaagccggccctaattttctctctctagatttt 9919279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 5701065 - 5701104
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctcta 375  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  5701065 tctccctctccaataagccggccctagttttctctctcta 5701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 31836674 - 31836719
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||    
T  31836674 tctccctctccaacaagccggccctagttttctctctctaggtttt 31836719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 51871673 - 51871718
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  51871673 tctccctctccaacaagtcggccctaattttctctctctaggtttt 51871718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 40646497 - 40646541
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||    
T  40646497 ctccctctccaacaagccggccctagttttctctctctaggtttt 40646541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 45806081 - 45806038
Alignment:
Q  338 tccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45806081 tccctctccaacaagtcggtcctaattttctctctctagatttt 45806038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 5324825 - 5324785
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  5324825 ctctccaacaagtcagccctaattttctctctctagatttt 5324785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 50166374 - 50166326
Alignment:
Q  333 ttttctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||| ||||||||| |||||| || ||||||||||||||||| ||||    
T  50166374 ttttcttcctctccaacaagccgcccataattttctctctctaggtttt 50166326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 6972626 - 6972672
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  6972626 tctccctctccaacaagccggccctaattttctctctctaggttttt 6972672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 5333801 - 5333756
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  5333801 tctccctctccaacaagccggccctaattttttctctctaggtttt 5333756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 25273695 - 25273736
Alignment:
Q  340 cctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  25273695 cctctccaacaagccggccctagttttctctctctagatttt 25273736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 29965493 - 29965536
Alignment:
Q  338 tccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||    
T  29965493 tccctctccaacaagtcggccctaattttctctctctaggtttt 29965536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 31381945 - 31381899
Alignment:
Q  335 ttctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||| | | ||||||| ||||||||||||||||||||||||    
T  31381945 ttctccctcttccacaagccggtcctaattttctctctctagatttt 31381899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 50766784 - 50766739
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  50766784 tctccctctccaacaagccggccctagttttttctctctaggtttt 50766739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 867978 - 868018
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  867978 ctctccaaaaagccggccctagttttctctctctaggtttt 868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 10390025 - 10389981
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| |||||||||||| |||||||| ||||| ||||    
T  10390025 ctccctctccaacaagccggccctagttttctctttctaggtttt 10389981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 6143 - 6188
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6143 tctccctctccaataagccggccctaattttctctctttaggtttt 6188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 32607271 - 32607314
Alignment:
Q  338 tccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  32607271 tccctctccaacaagccggccctagttttctctctctagatttt 32607314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 4172368 - 4172414
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||    
T  4172368 tctccctctccaacaagtcggccctagttttctctctctagattttt 4172414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 366
Target Start/End: Original strand, 2342293 - 2342324
Alignment:
Q  335 ttctccctctccaataagccggccctaatttt 366  Q
    ||||||||||||||||||||||||||||||||    
T  2342293 ttctccctctccaataagccggccctaatttt 2342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 4178366 - 4178412
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||||||| ||| |||||||| |||||||||||||| |||||    
T  4178366 tctccctctccaacaagtcggccctagttttctctctctaggttttt 4178412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 25849623 - 25849668
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||    
T  25849623 tctccctctccaataagccggccctagtttt-tctctctaggttttt 25849668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 38855309 - 38855264
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||||    
T  38855309 tctccctctccaacaagccgaccctagttttctctctctaggtttt 38855264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 46934449 - 46934489
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| ||| ||||||||||||||||||||||| ||||    
T  46934449 ctctccaacaagtcggccctaattttctctctctaggtttt 46934489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 26492172 - 26492214
Alignment:
Q  339 ccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  26492172 ccctctccaataagccggccctagttttatctctctagatttt 26492214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 12539228 - 12539183
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  12539228 tctccctctccaacaagccgaccctagttttctctctctagatttt 12539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 23085326 - 23085371
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  23085326 tctccctctccaacaagccgaccctaattttctctctctaggtttt 23085371  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 42311084 - 42311129
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  42311084 tctccctctccaacaagccgaccctaattttctctctctaggtttt 42311129  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 21266196 - 21266232
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctct 372  Q
    |||||||||||||||||||||||||| ||||||||||    
T  21266196 tctccctctccaataagccggccctagttttctctct 21266232  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 22928138 - 22928098
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  22928138 ctctccaacaagccggccctaattttctctctctaggtttt 22928098  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 46821819 - 46821863
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||    
T  46821819 ctccctctccaacaagccggccctagttttctctctctaggtttt 46821863  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 1449098 - 1449056
Alignment:
Q  340 cctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||| |||||||||||| |||||||||||||| |||||    
T  1449098 cctctccaacaagccggccctagttttctctctctaggttttt 1449056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 26583518 - 26583564
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagattttt 382  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||||    
T  26583518 tctccctctccaacaagccggccctagttttctctttctaggttttt 26583564  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 9619631 - 9619586
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  9619631 tctccctctccaacaagccggctctagttttctctctctagatttt 9619586  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 29777041 - 29777085
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||    
T  29777041 ctccctctccaacaagtcggccctaattttctctctctaggtttt 29777085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 19876029 - 19876064
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctct 372  Q
    |||||||||||| |||||||||||||||||||||||    
T  19876029 ctccctctccaacaagccggccctaattttctctct 19876064  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 33895903 - 33895938
Alignment:
Q  346 caataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33895903 caataagccggccctaattttctctctctaggtttt 33895938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 14907197 - 14907152
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  14907197 tctccctctctaataagccgaccctagttttctctctctaggtttt 14907152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 11196704 - 11196748
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||    
T  11196704 ctccctctccaacaagctggccctagttttctctctctagttttt 11196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 11725506 - 11725538
Alignment:
Q  349 taagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||||||||||||||||    
T  11725506 taagccggccctagttttctctctctagatttt 11725538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 44100200 - 44100160
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  44100200 ctctccaacaagccggccctagttttctctctctaggtttt 44100160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 16418963 - 16419008
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  16418963 tctccctctccaacaagccggccttaattttctctctctaggtttt 16419008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 25064039 - 25064084
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||    
T  25064039 tctccctctccaacaagccggccctagttttctctctctaggtttt 25064084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 8496769 - 8496814
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  8496769 tctccctctccaataagtcggtcctagttttctctctctaggtttt 8496814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 17334582 - 17334625
Alignment:
Q  337 ctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||    
T  17334582 ctccctctccaataaaccgacccta-ttttctctctctagatttt 17334625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 19281217 - 19281172
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  19281217 tctccctctccaacaagtcggccctaattttctctctctaggtttt 19281172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 19260082 - 19260045
Alignment:
Q  335 ttctccctctccaataagccggccctaattttctctct 372  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  19260082 ttctcccactccaacaagccggccctaattttctctct 19260045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 42579684 - 42579729
Alignment:
Q  336 tctccctctccaataagccggccctaattttctctctctagatttt 381  Q
    ||||||||||||| ||||| |||||| |||||||||||||| ||||    
T  42579684 tctccctctccaacaagcccgccctagttttctctctctaggtttt 42579729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 36344757 - 36344717
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| ||| ||||||||||||| ||||||||||||||    
T  36344757 ctctccaacaagtcggccctaattttttctctctagatttt 36344717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 41184712 - 41184672
Alignment:
Q  341 ctctccaataagccggccctaattttctctctctagatttt 381  Q
    |||||||| ||||||||||||||||||| ||||||| ||||    
T  41184712 ctctccaacaagccggccctaattttctttctctaggtttt 41184672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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