View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19287_low_8 (Length: 260)
Name: NF19287_low_8
Description: NF19287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19287_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 34360898 - 34361121
Alignment:
| Q |
18 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
117 |
Q |
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| T |
34360898 |
atggaggagactttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcattggatcctttttt-atagtttg |
34360996 |
T |
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| Q |
118 |
aaactgagaagttgcaactcttctcttttcctatctctatgtatacaatgcatgtttacttagttctgttcaagatgctagcatggactgaggcttttag |
217 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34360997 |
aaagtgagaagttgcaactcttcccttttcctatctctatgtatacaatgcatgtttacttagctctgttcaagatgctagcatggactgaggcttttaa |
34361096 |
T |
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| Q |
218 |
aagtccaacttctgctgcatcttat |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
34361097 |
aagtccaacttctgctgcatcttat |
34361121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 5584688 - 5584814
Alignment:
| Q |
18 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
117 |
Q |
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| T |
5584688 |
atggaggagactttatcctattattttagtatgaaggcttgagcatcttacttttgtgaatgaagcacttcctt-----ggtacctttttttatagtttg |
5584782 |
T |
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| Q |
118 |
aaactgagaagttgcaactcttctcttttcct |
149 |
Q |
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| T |
5584783 |
aaagtgagaagttgcaactcttctcctttcct |
5584814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 25291656 - 25291746
Alignment:
| Q |
152 |
ctctatgtatacaatgcatgtttacttagttctgttcaagatgctagcatggactgaggcttttagaagtccaacttctgctgcatcttat |
242 |
Q |
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| T |
25291656 |
ctctatgtatgcgatgtatctttactttgttctgttgaagatgttagcatgaactaaggcttttagaagtccaacttttgctgcatcttat |
25291746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 31807808 - 31807854
Alignment:
| Q |
196 |
tagcatggactgaggcttttagaagtccaacttctgctgcatcttat |
242 |
Q |
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||||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
31807808 |
tagcatggactaaggcttttagaagttcaacttttgctgcatcttat |
31807854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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