View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19288_high_2 (Length: 375)
Name: NF19288_high_2
Description: NF19288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19288_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 67 - 359
Target Start/End: Original strand, 19383087 - 19383386
Alignment:
| Q |
67 |
caaaatggaagaccgtaaaagagcacttatcagtcgaatgcttcaatacgcacttctatatgatcttgtcaaaatcaataaaccttttttctctcaacat |
166 |
Q |
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| T |
19383087 |
caaaatggaagaccgtaaaagagcacttataagtcgaatgcttcaatatgcacttctatatgatcttgtcaaaatcaataaaccttttttctctcaacat |
19383186 |
T |
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| Q |
167 |
aattttatcattcaacgaacttcccaagccaaaccttttttggatttattggtatcaatcaatcaactcttatc-------atcatatcatatcataaca |
259 |
Q |
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| T |
19383187 |
aattttatcattcaacgaacttcccaagccaaaccttttttggatttattggtatcaatcaatcaactcttatcatcatatatcatatcatatcataaca |
19383286 |
T |
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| Q |
260 |
tgacttagaatggtatgaattaagccttttttgtatcatgtttaatttcaggattatgataaattgggttttacattcccaaattttaatttcaatgtat |
359 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19383287 |
tgacttagaatggtatgaatcaagccttttttgtatcatgtttaatttcaggattatgataaattgggtcttacattcccaaattttaatttcaatgtat |
19383386 |
T |
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