View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19288_high_3 (Length: 370)
Name: NF19288_high_3
Description: NF19288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19288_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 32822032 - 32821683
Alignment:
| Q |
19 |
ggattaggggacgaaatttctttgcaatgtcacttgatggtgtttttagttcttttcttaattaatagtgtcctctagctaaatttagtttagttcagtg |
118 |
Q |
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| T |
32822032 |
ggattaggggacgaaatttctttgcaatgtcacttgatggtgtttttagttcttttcttaattaatagtgtcctctagctaaatttagtttagttcagtg |
32821933 |
T |
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| Q |
119 |
gtgttttttaggggaagtagtagaattgcatttatgtatgtgttggtgatatcacattatcactcccactaacatcaatgaatagacttaaactaggatt |
218 |
Q |
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| T |
32821932 |
gtgttttttaggggaagtagtagaattgcatttatgtatgtattggtgatatcacattatcactcccactaacatcaatgaatagacttaaactaggatt |
32821833 |
T |
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| Q |
219 |
gtata-ttaaggcgataatttacctcaaaataagcgttaatatatgaaagcagtagctgaaagttttgtttccattcaaacaatggatgggtcatatatt |
317 |
Q |
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| T |
32821832 |
gtatatttaaggcgatcatttacctcaaaataagcgttagtatatgaaagcagtagctgaaagttttgtttccattcaaacaatggatgggtcatatatt |
32821733 |
T |
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| Q |
318 |
tatgtcggaaattccaccttgatttggttttcctctgaccgccttatatt |
367 |
Q |
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| T |
32821732 |
tatgtcggaaattccaccttgatttggttttcctctgaccgccttatatt |
32821683 |
T |
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