View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19288_high_5 (Length: 267)
Name: NF19288_high_5
Description: NF19288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19288_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31761265 - 31761005
Alignment:
| Q |
1 |
ttaaatcttaacatatgaatgttgtgtcttcaaggaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattc |
100 |
Q |
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| T |
31761265 |
ttaaatcttaacatgtgaatgttgtgtcttcaaggaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattc |
31761166 |
T |
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| Q |
101 |
ttaaagcaacttagtgaatttgctgacctggttctgtttactgctggtgttgaaggtttgatctaaaatactatgctcttcttatgctgcatttttgtat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
31761165 |
ttaaagcaacttagcgaatttgctgacctggttctgtttactgctggtgttgaaggtttgatctaaaatactatgctcttcttatgctgcatctctgtat |
31761066 |
T |
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| Q |
201 |
cacggaagcgcttttctatatatttaatgatattattctctaaattctcacaggttctgct |
261 |
Q |
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| T |
31761065 |
cacggaagcgctttcctatatatttaatgatattattctctaaattctcacaggttatgct |
31761005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 35574500 - 35574370
Alignment:
| Q |
29 |
ttcaaggaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagtgaatttgctgacc |
128 |
Q |
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|||||||||| ||| ||| ||||| ||| ||||||||||| ||||||||||| || ||| |||| |||||||||| | ||||||||||||||||||||| |
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| T |
35574500 |
ttcaaggaaggagaaggaagaccaaaaattaattatgttacagtctttgaacggcctgggttgaaggaattcttaacgaaacttagtgaatttgctgacc |
35574401 |
T |
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| Q |
129 |
tggttctgtttactgctggtgttgaaggttt |
159 |
Q |
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|||| ||||||||||| ||| |||||||||| |
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| T |
35574400 |
tggtgctgtttactgcgggtcttgaaggttt |
35574370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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