View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19288_low_1 (Length: 399)

Name: NF19288_low_1
Description: NF19288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19288_low_1
NF19288_low_1
[»] chr2 (14 HSPs)
chr2 (14-393)||(22357885-22358271)
chr2 (303-383)||(22357216-22357296)
chr2 (188-237)||(44496718-44496767)
chr2 (193-237)||(37320535-37320579)
chr2 (191-237)||(5676736-5676782)
chr2 (189-255)||(31815888-31815953)
chr2 (188-233)||(2661070-2661115)
chr2 (196-249)||(25076772-25076825)
chr2 (200-237)||(42200693-42200730)
chr2 (182-246)||(2256959-2257023)
chr2 (193-237)||(10156016-10156060)
chr2 (194-234)||(13000685-13000725)
chr2 (194-246)||(27152353-27152405)
chr2 (194-238)||(39088816-39088860)
[»] chr4 (23 HSPs)
chr4 (191-254)||(54151626-54151689)
chr4 (187-237)||(25783144-25783194)
chr4 (197-261)||(44909827-44909890)
chr4 (191-257)||(2434457-2434522)
chr4 (191-241)||(7967639-7967689)
chr4 (192-258)||(21317336-21317401)
chr4 (192-237)||(44857204-44857249)
chr4 (187-255)||(8027398-8027465)
chr4 (193-237)||(19124640-19124684)
chr4 (192-260)||(20098751-20098818)
chr4 (194-261)||(6087747-6087813)
chr4 (194-241)||(34968342-34968389)
chr4 (191-257)||(7230277-7230342)
chr4 (191-237)||(16733537-16733583)
chr4 (191-253)||(22055278-22055340)
chr4 (193-246)||(7371557-7371610)
chr4 (192-237)||(29908054-29908099)
chr4 (199-240)||(46409496-46409537)
chr4 (193-237)||(7922268-7922312)
chr4 (193-237)||(11269693-11269737)
chr4 (192-240)||(28751209-28751257)
chr4 (194-238)||(40847084-40847128)
chr4 (193-237)||(42316842-42316886)
[»] chr1 (17 HSPs)
chr1 (188-255)||(29800527-29800593)
chr1 (192-237)||(24978242-24978287)
chr1 (192-261)||(7574113-7574181)
chr1 (192-237)||(40618908-40618953)
chr1 (192-240)||(5270755-5270803)
chr1 (193-237)||(47719125-47719169)
chr1 (187-254)||(3509942-3510009)
chr1 (193-236)||(35283503-35283546)
chr1 (194-237)||(51067912-51067955)
chr1 (191-237)||(29506824-29506870)
chr1 (191-237)||(49875617-49875663)
chr1 (188-234)||(50849094-50849140)
chr1 (186-223)||(15926277-15926314)
chr1 (193-246)||(19620575-19620628)
chr1 (191-255)||(8269369-8269432)
chr1 (191-255)||(18166599-18166662)
chr1 (187-227)||(30895327-30895367)
[»] chr7 (16 HSPs)
chr7 (191-240)||(5584644-5584693)
chr7 (191-240)||(5589604-5589653)
chr7 (188-237)||(429196-429245)
chr7 (190-246)||(40867026-40867082)
chr7 (190-237)||(8879765-8879812)
chr7 (195-237)||(7481226-7481268)
chr7 (182-240)||(35763693-35763751)
chr7 (194-236)||(44377070-44377112)
chr7 (194-236)||(44385937-44385979)
chr7 (191-236)||(6567416-6567461)
chr7 (189-234)||(28012635-28012680)
chr7 (193-237)||(21322174-21322218)
chr7 (188-240)||(27068172-27068224)
chr7 (188-240)||(27210089-27210141)
chr7 (194-246)||(37230037-37230089)
chr7 (193-237)||(48007565-48007609)
[»] chr5 (21 HSPs)
chr5 (188-233)||(10045326-10045371)
chr5 (193-241)||(6898020-6898068)
chr5 (193-237)||(35109399-35109443)
chr5 (193-237)||(27679497-27679541)
chr5 (188-243)||(16133077-16133132)
chr5 (191-246)||(31198706-31198761)
chr5 (189-255)||(13864339-13864404)
chr5 (191-237)||(20211277-20211323)
chr5 (191-237)||(30893930-30893976)
chr5 (195-237)||(31159430-31159472)
chr5 (188-237)||(8545007-8545056)
chr5 (192-237)||(31545869-31545914)
chr5 (188-261)||(31877922-31877994)
chr5 (188-237)||(36623192-36623241)
chr5 (194-234)||(9123866-9123906)
chr5 (193-237)||(16485981-16486025)
chr5 (189-237)||(17046329-17046377)
chr5 (193-237)||(31308661-31308705)
chr5 (193-237)||(34206226-34206270)
chr5 (191-227)||(35943280-35943316)
chr5 (191-255)||(36321494-36321558)
[»] scaffold0896 (1 HSPs)
scaffold0896 (191-237)||(3138-3184)
[»] chr6 (10 HSPs)
chr6 (191-237)||(8810637-8810683)
chr6 (191-246)||(8834927-8834982)
chr6 (191-237)||(331904-331950)
chr6 (187-237)||(1918476-1918526)
chr6 (191-237)||(7081672-7081718)
chr6 (192-237)||(5040851-5040896)
chr6 (193-237)||(8381212-8381256)
chr6 (193-237)||(16403976-16404020)
chr6 (185-245)||(17420728-17420788)
chr6 (189-241)||(32524434-32524486)
[»] chr3 (20 HSPs)
chr3 (186-240)||(52535880-52535934)
chr3 (188-237)||(10843799-10843848)
chr3 (185-257)||(35863812-35863883)
chr3 (191-242)||(21967553-21967604)
chr3 (191-242)||(21989989-21990040)
chr3 (190-257)||(27185473-27185539)
chr3 (191-246)||(48315033-48315088)
chr3 (191-234)||(48376832-48376875)
chr3 (191-234)||(53633638-53633681)
chr3 (187-237)||(2078233-2078283)
chr3 (192-257)||(19126547-19126610)
chr3 (193-241)||(32951916-32951965)
chr3 (188-233)||(48673869-48673914)
chr3 (186-234)||(5117200-5117248)
chr3 (193-237)||(17588361-17588405)
chr3 (193-237)||(22472338-22472382)
chr3 (191-227)||(28808175-28808211)
chr3 (197-237)||(46051911-46051951)
chr3 (193-237)||(48417885-48417929)
chr3 (191-255)||(52904144-52904207)
[»] scaffold0007 (1 HSPs)
scaffold0007 (191-242)||(1568-1619)
[»] chr8 (12 HSPs)
chr8 (194-237)||(36392840-36392883)
chr8 (191-237)||(17062357-17062403)
chr8 (191-237)||(17585955-17586001)
chr8 (194-236)||(20164233-20164275)
chr8 (191-237)||(23816787-23816833)
chr8 (192-246)||(36781406-36781460)
chr8 (183-237)||(37015854-37015908)
chr8 (191-237)||(37999438-37999484)
chr8 (192-237)||(12249503-12249548)
chr8 (193-234)||(36918494-36918535)
chr8 (188-237)||(42700499-42700548)
chr8 (193-237)||(2114886-2114930)
[»] scaffold0126 (1 HSPs)
scaffold0126 (188-237)||(34906-34955)
[»] scaffold0238 (1 HSPs)
scaffold0238 (193-237)||(25388-25432)
[»] scaffold0024 (1 HSPs)
scaffold0024 (200-240)||(104555-104595)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 22358271 - 22357885
Alignment:
Q  14 catttttcttatgatgagttgggtcgtgagagcttatcaga-----aaattttaaaaaagtgttgacatgtatacttatttattaccaccgatgaggtct 108  Q
    ||||||||||||||||||||||||||||||||||||| |||     ||| | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  22358271 catttttcttatgatgagttgggtcgtgagagcttattagagtcagaaaatctaaaaaggtgttgacatgtatacttatttattaccaccgatgaggtct 22358172  T
Q  109 tcatattgacagtagagtttaaatttgattgttattaacacatgagtcgaatccttagcaattaaatccacacttgttagttctcgtgagcttaactcag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358171 tcatattgacagtagagtttaaatttgattgttattaacacatgagtcgaatccttagcaattaaatccacacttgttagttctcgtgagcttaactcag 22358072  T
Q  209 ttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctcagc--cnnnnnnnnntacagttgagcttaactttaatagaaaagcacgatg 306  Q
    ||| |||| ||||| ||||||||||||||  |||||||||||||||||| ||  |         | ||||||||||||||||||||||||||||||||||    
T  22358071 ttgataaaaataatgcatagtatatgcaagatcagggggttcaaacctcggccaccaaaaaaaatccagttgagcttaactttaatagaaaagcacgatg 22357972  T
Q  307 gttgcctaattacaaagtcttgctatttttgctagttgtttgttgaacgatcaatttttggctttctttaatgattagtattatcta 393  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22357971 gttgcctaattacaaagtcttgctattgttgctagttgtttgttgaatgatcaatttttggctttctttaatgattagtattatcta 22357885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 22357296 - 22357216
Alignment:
Q  303 gatggttgcctaattacaaagtcttgctatttttgctagttgtttgttgaacgatcaatttttggctttctttaatgatta 383  Q
    ||||||||| ||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  22357296 gatggttgcttaattacaaagtctttctattattgctatttgtttgttgaatgatcaatttttggctttcttgaatgatta 22357216  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 44496767 - 44496718
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||| |||||||||||| || |||||||| |||||||||    
T  44496767 gttctcgtgagcttagctcagttggtaaggacaatacataatatatgcaa 44496718  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 37320579 - 37320535
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||    
T  37320579 cgtgagcttaactcagttggtaaagacaatgcataatatatgcaa 37320535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 5676736 - 5676782
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||||    
T  5676736 ctcgtgagcttaactcagttggtaatgacaatgcataatatatgcaa 5676782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 31815953 - 31815888
Alignment:
Q  189 ttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    ||||||||||||||||||||||||||  || ||| |||| ||||||||| |||  ||||||||||||    
T  31815953 ttctcgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtc-cggggttcaaacc 31815888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 2661115 - 2661070
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatat 233  Q
    |||||||||||||||||||||||||||| || ||| |||| |||||    
T  2661115 gttctcgtgagcttaactcagttggtaaggacaatgcataatatat 2661070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 25076772 - 25076825
Alignment:
Q  196 gagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggtt 249  Q
    ||||||||||||||||||||||||| | |||  ||||||||||| | |||||||    
T  25076772 gagcttaactcagttggtaaagatattgcattttatatgcaaagaccgggggtt 25076825  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 42200693 - 42200730
Alignment:
Q  200 ttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  42200693 ttaactcagttggtaaagacaatacataatatatgcaa 42200730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 2256959 - 2257023
Alignment:
Q  182 ttgttagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||| ||| ||||||||||||||||||||||||  || ||| |||| ||||||||| ||| ||||    
T  2256959 ttgtcagtcctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctgggg 2257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 10156016 - 10156060
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||| |||||||||||| || |||||||| |||||||||    
T  10156016 cgtgagcttagctcagttggtaaggacaatacataatatatgcaa 10156060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 13000685 - 13000725
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||| ||||||||||||||||||| |||| ||||||    
T  13000685 gtgagcttagctcagttggtaaagataatgcataatatatg 13000725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 27152353 - 27152405
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||||||||||||||||||  |||||| |||| ||||||||| ||| ||||    
T  27152353 gtgagcttaactcagttggtagggataatgcataatatatgcaaggtctgggg 27152405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 39088860 - 39088816
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaa 238  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||||    
T  39088860 gtgaacttaactcagttggtaaagacaatgcataatatatgcaaa 39088816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 54151689 - 54151626
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaac 254  Q
    ||||||||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||||||    
T  54151689 ctcgtgagcttaactcagttggtaaggataatgtataatatatgcaaagtccgggggttcaaac 54151626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25783144 - 25783194
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||    
T  25783144 agttctcgtgagtttaactcagttggtagggataatacatagtatatgcaa 25783194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 44909827 - 44909890
Alignment:
Q  197 agcttaactcagttggtaaagataatacatagtatatgcaaag-tcagggggttcaaacctcagcc 261  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||  |||||||||||||||||    
T  44909827 agcttaactcagttggtaaagacaatgcatagtatatgcaaagttca--gggttcaaacctcagcc 44909890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 2434522 - 2434457
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctc 257  Q
    |||||||||||||||||||||||| |||  || |||| ||||||||| |||| ||||||||||||||    
T  2434522 ctcgtgagcttaactcagttggtagagacgatgcatactatatgcaaggtca-ggggttcaaacctc 2434457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 7967689 - 7967639
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtc 241  Q
    ||||||||||||||| |||| ||||||||||| |||| |||||||||||||    
T  7967689 ctcgtgagcttaacttagttcgtaaagataatgcataatatatgcaaagtc 7967639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 21317401 - 21317336
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctca 258  Q
    ||||||||||| ||||||||||| ||| ||| |||| ||||||||| |||| |||||||||||||||    
T  21317401 tcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtca-ggggttcaaacctca 21317336  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 44857249 - 44857204
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||    
T  44857249 tcgtgagcttaactcaattggtatagataatacataatatatgcaa 44857204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 8027465 - 8027398
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    |||||||||||| ||| |||||||||||| |||||| |||| |||||||||  || |||||||||||||    
T  8027465 agttctcgtgagtttagctcagttggtaaggataatgcataatatatgcaagatc-gggggttcaaacc 8027398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 19124684 - 19124640
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||    
T  19124684 cgtgagcttaactcagttgataaagacaatacataatatatgcaa 19124640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 20098818 - 20098751
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctcagc 260  Q
    ||||||||||||||||||||| | ||| |||||||| ||||||||| ||   |||||||||||||||||    
T  20098818 tcgtgagcttaactcagttggcagagacaatacataatatatgcaatgt-ttggggttcaaacctcagc 20098751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 6087747 - 6087813
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctcagcc 261  Q
    ||||||||| ||||||||||| ||||||| |||| ||||||||| |||  |||||||||||| |||||    
T  6087747 gtgagcttagctcagttggtatagataatgcataatatatgcaaggtc-tggggttcaaaccccagcc 6087813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 34968342 - 34968389
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaagtc 241  Q
    ||||||||||||||||||||||| ||||| |||| |||||| ||||||    
T  34968342 gtgagcttaactcagttggtaaaaataatgcataatatatgtaaagtc 34968389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 7230277 - 7230342
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctc 257  Q
    |||||||||||| |||||||||||| || ||| |||| ||||||||| |||  ||||||||||||||    
T  7230277 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtc-cggggttcaaacctc 7230342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 16733583 - 16733537
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||| ||||||||||  ||| |||||||||    
T  16733583 ctcgtgagcttaactcagttgataaagataatgtataatatatgcaa 16733537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 22055278 - 22055340
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaa 253  Q
    ||||||||||||||||||||| |||||||  | |||| |||||||||  || |||||||||||    
T  22055278 ctcgtgagcttaactcagttgataaagatcttgcatactatatgcaagatccgggggttcaaa 22055340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 7371610 - 7371557
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    ||||||||||||||||||| ||| || |||||||| ||||||||| ||| ||||    
T  7371610 cgtgagcttaactcagttgataaggacaatacataatatatgcaaggtccgggg 7371557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 29908054 - 29908099
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| || ||| |||| |||||||||    
T  29908054 tcgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 29908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 46409537 - 46409496
Alignment:
Q  199 cttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||||||||||||||||||| ||| |||| ||||||||||||    
T  46409537 cttaactcagttggtaaagacaatgcataatatatgcaaagt 46409496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 7922312 - 7922268
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||| ||||||||||||||| ||| |||| |||||||||    
T  7922312 cgtgagcttatctcagttggtaaagacaatgcataatatatgcaa 7922268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 11269693 - 11269737
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||| ||||||||| || |||||||| |||||||||    
T  11269693 cgtgagcttaacttagttggtaaggacaatacataatatatgcaa 11269737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 28751209 - 28751257
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    ||||||||||||||||||| ||| | | |||||||| ||||||||||||    
T  28751209 tcgtgagcttaactcagttagtataaacaatacataatatatgcaaagt 28751257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 40847128 - 40847084
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaa 238  Q
    |||||||||||||||||| || ||| |||||||| ||||||||||    
T  40847128 gtgagcttaactcagttgatagagacaatacataatatatgcaaa 40847084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 42316886 - 42316842
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||||| | | |||| |||||||||    
T  42316886 cgtgagcttaactcagttggtaaagacagtgcataatatatgcaa 42316842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 29800527 - 29800593
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    |||||||||||||||||||||||||||| |||||| ||||  |||||||| ||| |||||||||||||    
T  29800527 gttctcgtgagcttaactcagttggtaaggataatgcataaaatatgcaaggtc-gggggttcaaacc 29800593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 24978242 - 24978287
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  24978242 tcgtgagcttaactcagttggtatagataatacataatatatgcaa 24978287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 7574181 - 7574113
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctcagcc 261  Q
    ||||||| |||||||||||||||| || ||| |||||||||||||| ||||   ||||||||||||||||    
T  7574181 tcgtgagtttaactcagttggtaaggacaatgcatagtatatgcaaggtca-atggttcaaacctcagcc 7574113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 40618908 - 40618953
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||||    
T  40618908 tcgtgagtttaactcagttggtaaagataatgcataatatatgcaa 40618953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 5270803 - 5270755
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    ||||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  5270803 tcgtgagcttaactcagttagtagagataatgcataatatatgcaaagt 5270755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 47719169 - 47719125
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||    
T  47719169 cgtgagcttaactcagttggtaaggataatgcataatatatgcaa 47719125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 3510009 - 3509942
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaac 254  Q
    ||||||||||| |||| |||||||||||  || ||| |||| ||||||||| ||| ||||||||||||    
T  3510009 agttctcgtgaacttagctcagttggtatggacaatgcataatatatgcaaggtccgggggttcaaac 3509942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 35283503 - 35283546
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgca 236  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||    
T  35283503 cgtgaacttaactcagttggtaaagatattacatattatatgca 35283546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 51067955 - 51067912
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||  |||||||||| |||||||||    
T  51067955 gtgagcttaactcagttggtaagaataatacataatatatgcaa 51067912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 29506824 - 29506870
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  29506824 ctcgtgagcttaacttagttggtatagacaatacataatatatgcaa 29506870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 49875663 - 49875617
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||||    
T  49875663 ctcgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 49875617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 50849140 - 50849094
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    |||||||||||||||||||||||||||| || ||| |||| ||||||    
T  50849140 gttctcgtgagcttaactcagttggtaatgacaatgcataatatatg 50849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 15926314 - 15926277
Alignment:
Q  186 tagttctcgtgagcttaactcagttggtaaagataata 223  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  15926314 tagttctcgtgagcttaactcagttggtatagacaata 15926277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 19620575 - 19620628
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||||||| |||||||||||| || |||||||| ||||||||| ||| ||||    
T  19620575 cgtgagcttagctcagttggtaaggacaatacataatatatgcaaggtccgggg 19620628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 8269432 - 8269369
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    ||||||| |||| |||||||||||| || |||||||| ||||||||| |||  ||||||||||||    
T  8269432 ctcgtgaacttagctcagttggtaaggacaatacataatatatgcaaggtc-cggggttcaaacc 8269369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 18166599 - 18166662
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    |||||| ||||| ||||||||||| ||| ||| |||| |||||||||||||  ||||||||||||    
T  18166599 ctcgtgggcttagctcagttggtatagacaatgcataatatatgcaaagtc-cggggttcaaacc 18166662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 30895327 - 30895367
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacata 227  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  30895327 agttctcgtgagcttaactcagttggtatggacaatacata 30895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 5584644 - 5584693
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  5584644 ctcgtgagcttagctcaattggtaaagataatacataatatatgcaaagt 5584693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 5589604 - 5589653
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  5589604 ctcgtgagcttagctcaattggtaaagataatacataatatatgcaaagt 5589653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 429245 - 429196
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| ||  ||||||||||| |||||||||    
T  429245 gttctcgtgagcttaactcagttgatatggataatacataatatatgcaa 429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 40867026 - 40867082
Alignment:
Q  190 tctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||| |||||||||| ||||||||||| ||| |||||||||||||| ||| ||||    
T  40867026 tctcgtaagcttaactccgttggtaaagacaatgcatagtatatgcaaggtccgggg 40867082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 8879812 - 8879765
Alignment:
Q  190 tctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||||| ||| ||| |||| |||||||||    
T  8879812 tctcgtgagcttaactcagttggtatagacaatgcataatatatgcaa 8879765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 7481226 - 7481268
Alignment:
Q  195 tgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| |||||||| | |||||||    
T  7481226 tgagcttaactcagttggtaaagacaatacataatgtatgcaa 7481268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 35763693 - 35763751
Alignment:
Q  182 ttgttagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||| ||| |||||||||||||||||||| |||| || ||| |||| ||||||||||||    
T  35763693 ttgtaagtcctcgtgagcttaactcagttcgtaaggacaatgcataatatatgcaaagt 35763751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 44377112 - 44377070
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgca 236  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||    
T  44377112 gtgagcttaactcagttggtagagatattacatattatatgca 44377070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 44385979 - 44385937
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgca 236  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||    
T  44385979 gtgagcttaactcagttggtagagatattacatattatatgca 44385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 6567461 - 6567416
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgca 236  Q
    ||||| ||||||||||||||||||| |||| |||||| ||||||||    
T  6567461 ctcgtaagcttaactcagttggtaaggatattacataatatatgca 6567416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 28012680 - 28012635
Alignment:
Q  189 ttctcgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||    
T  28012680 ttctcgtgagcttaactcagttggtaaggacaatgcataatatatg 28012635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 21322174 - 21322218
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| |||||| |||| | |||||||    
T  21322174 cgtgagcttaactcagttggtaaggataatgcataatgtatgcaa 21322218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 27068224 - 27068172
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||||||| |||||| |||||||||||  |||||| |||| ||||||||||||    
T  27068224 gttctcgtaagcttagctcagttggtatggataatgcatattatatgcaaagt 27068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 27210089 - 27210141
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||||||| |||||| |||||||||||  |||||| |||| ||||||||||||    
T  27210089 gttctcgtaagcttagctcagttggtatggataatgcatattatatgcaaagt 27210141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 37230089 - 37230037
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||||||||||||||||||| || ||| |||| ||||||||| ||| ||||    
T  37230089 gtgagcttaactcagttggtaaggaaaatgcataatatatgcaaggtctgggg 37230037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 48007609 - 48007565
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| || ||| |||| |||||||||    
T  48007609 cgtgagcttaactcagttggtaatgacaatgcataatatatgcaa 48007565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 10045326 - 10045371
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatat 233  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  10045326 gttctcgagagcttaactcagttggtaaagataatacataatatat 10045371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 6898020 - 6898068
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtc 241  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  6898020 cgtgagcttaacttagttggtaaagataatgcataatatatgcaaagtc 6898068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 35109399 - 35109443
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  35109399 cgtgagcttaactcagttggtaaagacaatacataatatatgcaa 35109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 27679497 - 27679541
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||    
T  27679497 cgtgagcttagctcagttggtaaagataatgcataatatatgcaa 27679541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 16133132 - 16133077
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcag 243  Q
    ||||||||||||||| |||||||||||| || ||| |||| ||||||||| |||||    
T  16133132 gttctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtcag 16133077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 31198706 - 31198761
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||||||| || |||||    
T  31198706 ctcgtgatcttaactcagttggtaaggataatgcataatatatgcaacgtgagggg 31198761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 13864339 - 13864404
Alignment:
Q  189 ttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    ||||||||||||||||||||||||||   | |||||||| ||||||||| |||  ||||||||||||    
T  13864339 ttctcgtgagcttaactcagttggtatgaacaatacataatatatgcaaggtc-cggggttcaaacc 13864404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 20211277 - 20211323
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| |||||||||||  ||||||||||| |||||||||    
T  20211277 ctcgtgagcttatctcagttggtagggataatacataatatatgcaa 20211323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 30893930 - 30893976
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||| ||||||| ||| |||| |||||||||    
T  30893930 ctcgtgagcttaactcagtttgtaaagacaatgcataatatatgcaa 30893976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 31159430 - 31159472
Alignment:
Q  195 tgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||| |||||| |||||||| |||||||||    
T  31159430 tgagcttaactcagttgataaagacaatacataatatatgcaa 31159472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 8545056 - 8545007
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| ||| || ||| |||| |||||||||    
T  8545056 gttctcgtgagcttaactcagttgataaggacaatgcataatatatgcaa 8545007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 31545869 - 31545914
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||| | |||||| |||| |||||||||    
T  31545869 tcgtgagcttaactcagttggttaggataatgcataatatatgcaa 31545914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 31877922 - 31877994
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctcagcc 261  Q
    |||||||||||||||||||| ||||||  || ||| |||| |||||||||  ||| |||||||||||| |||||    
T  31877922 gttctcgtgagcttaactcacttggtatggacaatgcataatatatgcaagatca-ggggttcaaaccccagcc 31877994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 36623241 - 36623192
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| |||  ||||| |||| |||||||||    
T  36623241 gttctcgtgagcttaactcagttgataagaataatgcataatatatgcaa 36623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 9123906 - 9123866
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  9123906 gtgagcttaactcagttggtaaagacaatgcataatatatg 9123866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 16486025 - 16485981
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||| ||| |||||||| |||||||| |||||||||    
T  16486025 cgtgagcttaactaagtcggtaaagacaatacataatatatgcaa 16485981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 17046329 - 17046377
Alignment:
Q  189 ttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||||||  || ||| |||| |||||||||    
T  17046329 ttctcgtgagcttaactcagttggtatggacaatgcataatatatgcaa 17046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 31308705 - 31308661
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||| ||||||||||||||| |||| ||| |||||||||    
T  31308705 cgtgagcttagctcagttggtaaagacaatatataatatatgcaa 31308661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 34206226 - 34206270
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||| ||||||||||||||||||| ||| |||| |||||||||    
T  34206226 cgtgagtttaactcagttggtaaagacaatgcataatatatgcaa 34206270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 35943316 - 35943280
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacata 227  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  35943316 ctcgtgagcttaactcagttggtaaagacaatgcata 35943280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 36321558 - 36321494
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    |||||||||||| |||||||||||| || ||| |||| ||||||||| ||  |||||||| ||||    
T  36321558 ctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtttgggggttcgaacc 36321494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 3138 - 3184
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||    
T  3138 ctcgtgagcttagctcagttggtaaagacaatacataatatatgcaa 3184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 8810637 - 8810683
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||    
T  8810637 ctcgtgagcttagctcagttggtaaagacaatacataatatatgcaa 8810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 8834927 - 8834982
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    ||||||||||||||||||||| ||| |||||| |||| | ||||||||||| ||||    
T  8834927 ctcgtgagcttaactcagttgataaggataatgcataatgtatgcaaagtccgggg 8834982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 331950 - 331904
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||    
T  331950 ctcgtgagcttaactcagttggtagagacaatgcataatatatgcaa 331904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 1918526 - 1918476
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| ||||||||||||||| ||| ||| |||| |||||||||    
T  1918526 agttctcgtgagtttaactcagttggtatagacaatgcataatatatgcaa 1918476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 7081718 - 7081672
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||    
T  7081718 ctcgtgagcttagctcagttgataaagacaatacataatatatgcaa 7081672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 5040896 - 5040851
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||| ||||||||||||||| || ||||| |||||||||    
T  5040896 tcgtgagcttagctcagttggtaaagacaaaacataatatatgcaa 5040851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 8381256 - 8381212
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||    
T  8381256 cgtgagcttaactcagttggtaaagacaatgcataacatatgcaa 8381212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 16404020 - 16403976
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||| | ||||||| |||| |||||||||    
T  16404020 cgtgagcttaactcagttggcagagataatgcataatatatgcaa 16403976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 17420788 - 17420728
Alignment:
Q  185 ttagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcaggg 245  Q
    |||||| |||| |||||||||||||||||| | | |||||||| |||||| || |||||||    
T  17420788 ttagttatcgtaagcttaactcagttggtataaacaatacataatatatgtaaggtcaggg 17420728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 32524486 - 32524434
Alignment:
Q  189 ttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtc 241  Q
    ||||||||||||||||||| ||||||  || ||| |||| |||||||||||||    
T  32524486 ttctcgtgagcttaactcaattggtagggacaatgcataatatatgcaaagtc 32524434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 52535934 - 52535880
Alignment:
Q  186 tagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    |||| |||||||||||||||||||| ||| ||| |||||||| ||||||||||||    
T  52535934 tagtcctcgtgagcttaactcagttagtatagacaatacataatatatgcaaagt 52535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 10843848 - 10843799
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||||||||   |||||||||| |||||||||    
T  10843848 gttctcgtgagcttaactcagttggtatgaataatacataatatatgcaa 10843799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 35863883 - 35863812
Alignment:
Q  185 ttagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctc 257  Q
    ||||| ||||| |||||| |||||||||||| || |||||||| ||||||||| |||  ||||||||||||||    
T  35863883 ttagtcctcgtaagcttagctcagttggtaaggacaatacataatatatgcaaggtc-tggggttcaaacctc 35863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 21967553 - 21967604
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtca 242  Q
    ||||||||||||||||||||||||| || |||  ||| ||||||||||||||    
T  21967553 ctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaagtca 21967604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 21989989 - 21990040
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtca 242  Q
    ||||||||||||||||||||||||| || |||  ||| ||||||||||||||    
T  21989989 ctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaagtca 21990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 27185473 - 27185539
Alignment:
Q  190 tctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctc 257  Q
    ||||||||||||| |||||||||||  || |||||||| ||||||||| |||  ||||||||||||||    
T  27185473 tctcgtgagcttagctcagttggtagggacaatacataatatatgcaaggtc-tggggttcaaacctc 27185539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 48315088 - 48315033
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||||||||| |||||||||||| |||||| |||| ||||||||| ||| ||||    
T  48315088 ctcgtgagcttagctcagttggtaaggataatgcataatatatgcaaggtccgggg 48315033  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 48376832 - 48376875
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||    
T  48376832 ctcgtgagcttagctcagttggtaaagataatgcataatatatg 48376875  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 53633681 - 53633638
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||||||||||||||||||| |||||| |||| ||||||    
T  53633681 ctcgtgagcttaactcagttggtaaggataatgcataatatatg 53633638  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 2078233 - 2078283
Alignment:
Q  187 agttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||| |||||||||||||||| ||| ||| |||| |||||||||    
T  2078233 agttctcgtgaacttaactcagttggtagagacaatgcataatatatgcaa 2078283  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 19126547 - 19126610
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacctc 257  Q
    ||||||||||||||||||| |||| |||||| |||| ||||||||| |||  || |||||||||||    
T  19126547 tcgtgagcttaactcagttagtaaggataatgcataatatatgcaatgtc--ggagttcaaacctc 19126610  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 32951916 - 32951965
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacat-agtatatgcaaagtc 241  Q
    |||||||||| ||||||||||||||||||| ||| | |||||||||||||    
T  32951916 cgtgagcttagctcagttggtaaagataatgcataaatatatgcaaagtc 32951965  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 48673914 - 48673869
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatat 233  Q
    |||| |||||| |||||||||||||||| ||||||||||| |||||    
T  48673914 gttcacgtgagtttaactcagttggtaaggataatacataatatat 48673869  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 5117200 - 5117248
Alignment:
Q  186 tagttctcgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||||||||||| |||||||| ||| || |||||||| ||||||    
T  5117200 tagttctcgtgagcttagctcagttgataaggacaatacataatatatg 5117248  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 17588361 - 17588405
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| || ||| |||| |||||||||    
T  17588361 cgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 17588405  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 22472382 - 22472338
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||| ||||| | |||| |||||||||    
T  22472382 cgtgagcttaactcagttggtagagatattgcatattatatgcaa 22472338  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 28808211 - 28808175
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacata 227  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  28808211 ctcgtgagcttaattcagttggtatagataatacata 28808175  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 46051911 - 46051951
Alignment:
Q  197 agcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||| ||| |||||||| |||||||||    
T  46051911 agcttaactcagttggtatagacaatacataatatatgcaa 46051951  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 48417929 - 48417885
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||| |||||||||||||| ||||| |||| |||||||||    
T  48417929 cgtgagcttcactcagttggtaaatataatgcataatatatgcaa 48417885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 52904207 - 52904144
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggggttcaaacc 255  Q
    |||||||| ||| |||||||||||| || ||| |||| ||||||||| ||| |||||||||||||    
T  52904207 ctcgtgaggttagctcagttggtaaggacaatgcataatatatgcaatgtc-gggggttcaaacc 52904144  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 1568 - 1619
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtca 242  Q
    ||||||||||||||||||||||||| |||| | |||| ||||||||| ||||    
T  1568 ctcgtgagcttaactcagttggtaacgatagtgcataatatatgcaaggtca 1619  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 36392883 - 36392840
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||| |||||| |||| |||||||||||||    
T  36392883 gtgagcttaactcagttgataaagacaatagatagtatatgcaa 36392840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 17062403 - 17062357
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||||    
T  17062403 ctcgtgagcttaactcagttgatatagacaatacataatatatgcaa 17062357  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 17585955 - 17586001
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||||    
T  17585955 ctcgtgagcttaactcagttgatatagacaatacataatatatgcaa 17586001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 20164275 - 20164233
Alignment:
Q  194 gtgagcttaactcagttggtaaagataatacatagtatatgca 236  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||    
T  20164275 gtgagcttaactcagttggtagagatattacatattatatgca 20164233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 23816787 - 23816833
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||| |||||||||||| |||||| |||| |||||||||    
T  23816787 ctcgtgagcttagctcagttggtaaggataatgcataatatatgcaa 23816833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 36781406 - 36781460
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaaagtcagggg 246  Q
    |||||||| || |||||||||||| || |||||||| ||||||||||||| ||||    
T  36781406 tcgtgagcctagctcagttggtaaggacaatacataatatatgcaaagtccgggg 36781460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 37015908 - 37015854
Alignment:
Q  183 tgttagttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||| |||||||||||| ||||||||||| ||| ||| |||| |||||||||    
T  37015908 tgttagtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaa 37015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 37999484 - 37999438
Alignment:
Q  191 ctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||||  |||||| |||| |||||||||    
T  37999484 ctcgtgagcttaactcagttggtatggataatgcataatatatgcaa 37999438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 12249548 - 12249503
Alignment:
Q  192 tcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||| ||||||||||||||  ||| |||||||||    
T  12249548 tcgtgagcttaactcaattggtaaagataatgtataatatatgcaa 12249503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 36918494 - 36918535
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatg 234  Q
    ||||||||||||||||||||||| |||| |||||| ||||||    
T  36918494 cgtgagcttaactcagttggtaaggatattacatattatatg 36918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 42700499 - 42700548
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||| ||||||| ||| ||| |||| |||||||||    
T  42700499 gttctcgtgagcttaactcggttggtagagacaatgcataatatatgcaa 42700548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 2114886 - 2114930
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  2114886 cgtgagcttaactcagttggtagagacaatacatattttatgcaa 2114930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 34955 - 34906
Alignment:
Q  188 gttctcgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    |||| ||||||||||||||||||||||| || ||| |||| |||||||||    
T  34955 gttcacgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 34906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 25388 - 25432
Alignment:
Q  193 cgtgagcttaactcagttggtaaagataatacatagtatatgcaa 237  Q
    ||||||||||||||||||||||| || ||| |||| |||||||||    
T  25388 cgtgagcttaactcagttggtaaggacaatgcataatatatgcaa 25432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 104595 - 104555
Alignment:
Q  200 ttaactcagttggtaaagataatacatagtatatgcaaagt 240  Q
    ||||||||||||||| ||| |||||||| ||||||||||||    
T  104595 ttaactcagttggtatagagaatacataatatatgcaaagt 104555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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