View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19288_low_4 (Length: 304)
Name: NF19288_low_4
Description: NF19288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19288_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 27507670 - 27507957
Alignment:
| Q |
1 |
gattaaattcgttgattttggtgcagcaacagatcataggattttggtccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagc |
100 |
Q |
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| T |
27507670 |
gattaaattcgttgattttggtgcagcaacagatcttaggattttgttccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagc |
27507769 |
T |
|
| Q |
101 |
caattgcagctttactttcaccaatattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaacaatt |
200 |
Q |
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| T |
27507770 |
caattgcagctttactttcacca-tattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaacaatt |
27507868 |
T |
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| Q |
201 |
ttttatattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtatacatacattaataagtactattt |
289 |
Q |
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| T |
27507869 |
ttttatattagtaaaagaagtatataggccaacatattgataaaatcacacgcaactttgaagtatacatacattaataagtactattt |
27507957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 27495199 - 27495481
Alignment:
| Q |
5 |
aaattcgttgattttggtgcagcaacagatcataggattttggtccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagccaat |
104 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
27495199 |
aaattcgttgattttggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaat |
27495298 |
T |
|
| Q |
105 |
tgcagctttactttcaccaatattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaacaatttttt |
204 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
27495299 |
tgcagcttgact--caccaatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaatttttt |
27495396 |
T |
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| Q |
205 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtatacatacattaataagtactattt |
289 |
Q |
| |
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| T |
27495397 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagtactattt |
27495481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 27501857 - 27502139
Alignment:
| Q |
5 |
aaattcgttgattttggtgcagcaacagatcataggattttggtccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagccaat |
104 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
27501857 |
aaattcgttgattttggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaat |
27501956 |
T |
|
| Q |
105 |
tgcagctttactttcaccaatattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaacaatttttt |
204 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
27501957 |
tgcagcttgact--caccaatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaatttttt |
27502054 |
T |
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| Q |
205 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtatacatacattaataagtactattt |
289 |
Q |
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| T |
27502055 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagtactattt |
27502139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 27516649 - 27516931
Alignment:
| Q |
5 |
aaattcgttgattttggtgcagcaacagatcataggattttggtccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagccaat |
104 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
27516649 |
aaattcgttgattttggtgcagcaacagatcttaggattttcgtcaacctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaat |
27516748 |
T |
|
| Q |
105 |
tgcagctttactttcaccaatattgtggcaggtctgacttcttttatcctatttaaatatgtagtcaaattaacataacattggcttctaacaatttttt |
204 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
27516749 |
tgcagcttgact--caccaatattgtggcaggtctgacatcttttatcctatttaaatatgtattcaaattaatataaaattggcttctaacaatttttt |
27516846 |
T |
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| Q |
205 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtatacatacattaataagtactattt |
289 |
Q |
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| T |
27516847 |
atattagtaaaagaagtatataggccaacatattgatagaatcacacgcaactttgaagtacacatacattaataagtactattt |
27516931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 27492579 - 27492691
Alignment:
| Q |
47 |
gtccccctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagccaattgcagctttactttcaccaatattgtggcaggtctgacttct |
146 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| | |||||||| ||||||||||| | | |||| |
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| T |
27492579 |
gtcctcctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttct |
27492678 |
T |
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| Q |
147 |
tttatcctattta |
159 |
Q |
| |
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|||||||||||| |
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| T |
27492679 |
gttatcctattta |
27492691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 27492881 - 27492935
Alignment:
| Q |
216 |
agaagtatataggccaacatattgatagaatcacacgcaactttgaagtatacat |
270 |
Q |
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| T |
27492881 |
agaagtatataggccaagatattgatagaatcaaacataacttttaagaatacat |
27492935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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