View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_high_11 (Length: 564)

Name: NF19289_high_11
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_high_11
NF19289_high_11
[»] chr3 (2 HSPs)
chr3 (18-558)||(34675188-34675728)
chr3 (302-352)||(33246317-33246367)
[»] chr4 (1 HSPs)
chr4 (226-558)||(43583177-43583509)
[»] chr7 (1 HSPs)
chr7 (251-502)||(12360610-12360861)
[»] chr8 (1 HSPs)
chr8 (301-541)||(15262586-15262826)
[»] chr6 (1 HSPs)
chr6 (236-376)||(591287-591427)


Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 34675728 - 34675188
Alignment:
Q  18 ccacctacacctccacttatatcctcataagaggtatcattaatccatggaatagcataaggaaaagaagagtaaaatccatttccatcaacatttccat 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34675728 ccacctacacctccacttatatcctcagaagaggtatcattaatccatggaatagcataaggaaaagaagagtaaaatccatttccatcaacatttccat 34675629  T
Q  118 taccaaatcttgaactaaactgtctttgagattgatgaaacgaagccggaacaacaagaggaggaagaggtggaagagaggtattcggagagatttcatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34675628 taccaaatcttgaactaaactgtctttgagattgatgaaacgaagccggaacaacaagaggaggaagaggtggaagagaggaattcggagagatttcatt 34675529  T
Q  218 gtaagcaaagcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34675528 gtaagcaaagcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataa 34675429  T
Q  318 acaggatctctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34675428 acaggatctctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgc 34675329  T
Q  418 ttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttcgacgaaggaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34675328 ttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttcgacgaaggaa 34675229  T
Q  518 tttgcaggctgcacatggtgaattgtatgagcttgatgatg 558  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34675228 tttgcaggctgcacatggtgaattgtatgagcttgatgatg 34675188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 33246317 - 33246367
Alignment:
Q  302 accaacacaaccataaacaggatctctcacacgtgcctcggcttcataagc 352  Q
    ||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  33246317 accaacacaaccataaacaggatctctcaaacgcgcttctgcttcataagc 33246367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 226 - 558
Target Start/End: Complemental strand, 43583509 - 43583177
Alignment:
Q  226 agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc 325  Q
    |||||||||||||||  |||||||  || |||||||||||||| || ||||||||||| || || |||||||| || || ||||| |||||||| |||||    
T  43583509 agcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc 43583410  T
Q  326 tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccg 425  Q
     || || ||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| | ||||||||| ||||| || ||     
T  43583409 cctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgagggagaagttcattgagaagctttgtgacattgctagcacca 43583310  T
Q  426 aagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttcgacgaaggaatttgcagg 525  Q
    || || ||||| |||||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||  |  | |||||||||||    
T  43583309 aatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcagg 43583210  T
Q  526 ctgcacatggtgaattgtatgagcttgatgatg 558  Q
    | ||||| ||||||||||||||||| |||||||    
T  43583209 cagcacaaggtgaattgtatgagctggatgatg 43583177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 251 - 502
Target Start/End: Original strand, 12360610 - 12360861
Alignment:
Q  251 atcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatctctcacacgtgcctcggcttcataa 350  Q
    ||||||||||||||| || ||   ||||||||| || ||||  || || ||||| || ||||||||||| |||||| | |  | |||||| |||||||||    
T  12360610 atcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataa 12360709  T
Q  351 gcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccgaagatcttgtgaacgtttgcaaatt 450  Q
    ||||| || |||||||||||||| || || || ||  | | ||| || || |  ||  | || |||||||| || || || |||||||| ||||||||||    
T  12360710 gcaagagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtgaacatttgcaaatt 12360809  T
Q  451 tttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgca 502  Q
    |||| |||||||| ||||| || ||||| ||||| |||||  ||||||||||    
T  12360810 tttgtggttcttctggtgggaaatatggagcaaatatgcaatctggcatgca 12360861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 541
Target Start/End: Complemental strand, 15262826 - 15262586
Alignment:
Q  301 caccaacacaaccataaacaggatctctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgag 400  Q
    |||||||||||||||||||||||||||  |  ||   ||| |||||||||||||| |||||||| |||||||| |  ||||||||| | |  || |||||    
T  15262826 caccaacacaaccataaacaggatctcgaagtcgcatctcagcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgag 15262727  T
Q  401 gatctttgtgacgttgcttgcgccgaagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatg 500  Q
     | |||||| || |||||||| || || ||  | ||||| |||||||||||||| || |  || |||||||| || ||||||||    ||  ||||   |    
T  15262726 aagctttgtaacattgcttgctccaaaaattctatgaacatttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaatgcacattctggttgg 15262627  T
Q  501 cattttcgacgaaggaatttgcaggctgcacatggtgaatt 541  Q
    |||||||| || || || ||||| |||||||||||||||||    
T  15262626 cattttcggcgtagaaacttgcatgctgcacatggtgaatt 15262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 591427 - 591287
Alignment:
Q  236 atcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatctctcacacgt 335  Q
    ||||||||| | || ||| ||||||||||||||  |  | | |||||| ||||| | ||| ||||| |||||||||||||| || |||||| | |  | |    
T  591427 atcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatcctt 591328  T
Q  336 gcctcggcttcataagcaagggaattcactgcatcttctct 376  Q
    || || ||||||||||| || |||||||| | |||||||||    
T  591327 gcttcagcttcataagctagagaattcaccgtatcttctct 591287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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