View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19289_high_13 (Length: 531)

Name: NF19289_high_13
Description: NF19289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19289_high_13
NF19289_high_13
[»] chr2 (12 HSPs)
chr2 (18-342)||(37559321-37559644)
chr2 (258-337)||(8884443-8884522)
chr2 (262-341)||(36772393-36772472)
chr2 (262-341)||(36793507-36793586)
chr2 (262-337)||(34643003-34643078)
chr2 (262-336)||(36756170-36756244)
chr2 (263-337)||(3197568-3197642)
chr2 (262-336)||(4713110-4713184)
chr2 (262-336)||(24359791-24359865)
chr2 (262-336)||(39082468-39082542)
chr2 (262-336)||(42968150-42968224)
chr2 (356-393)||(37559265-37559302)
[»] chr5 (2 HSPs)
chr5 (261-337)||(2626071-2626147)
chr5 (424-456)||(40152935-40152967)
[»] chr8 (7 HSPs)
chr8 (261-336)||(24864607-24864682)
chr8 (262-336)||(38085946-38086020)
chr8 (261-337)||(7895152-7895228)
chr8 (263-337)||(44415934-44416008)
chr8 (262-337)||(40866298-40866373)
chr8 (264-342)||(9963280-9963358)
chr8 (263-337)||(42014306-42014380)
[»] chr7 (7 HSPs)
chr7 (262-337)||(30034301-30034376)
chr7 (262-337)||(46075151-46075226)
chr7 (262-336)||(25287960-25288034)
chr7 (264-336)||(34984430-34984502)
chr7 (262-340)||(37022191-37022269)
chr7 (264-337)||(46972138-46972211)
chr7 (422-454)||(27881396-27881428)
[»] chr6 (8 HSPs)
chr6 (262-337)||(7432419-7432494)
chr6 (262-337)||(7441936-7442011)
chr6 (264-338)||(7432981-7433055)
chr6 (261-337)||(7425624-7425700)
chr6 (261-337)||(3992806-3992882)
chr6 (261-325)||(7414596-7414660)
chr6 (261-337)||(7418533-7418609)
chr6 (262-326)||(7420519-7420583)
[»] chr4 (8 HSPs)
chr4 (263-338)||(4690133-4690208)
chr4 (262-337)||(31553694-31553769)
chr4 (261-336)||(33871041-33871116)
chr4 (261-337)||(6067668-6067744)
chr4 (262-337)||(50968245-50968320)
chr4 (263-336)||(34505290-34505363)
chr4 (263-336)||(52818059-52818132)
chr4 (261-343)||(6071144-6071225)
[»] chr3 (9 HSPs)
chr3 (261-336)||(11580202-11580277)
chr3 (259-336)||(35679467-35679544)
chr3 (262-336)||(35687869-35687943)
chr3 (262-336)||(52638656-52638730)
chr3 (262-336)||(35692217-35692291)
chr3 (262-336)||(29618312-29618386)
chr3 (262-336)||(41552100-41552174)
chr3 (264-336)||(1488013-1488085)
chr3 (264-336)||(2031252-2031324)
[»] chr1 (10 HSPs)
chr1 (262-336)||(37369512-37369586)
chr1 (264-342)||(23058047-23058125)
chr1 (264-342)||(23057675-23057753)
chr1 (264-342)||(23057860-23057938)
chr1 (264-342)||(23061976-23062054)
chr1 (264-341)||(43065996-43066078)
chr1 (253-337)||(30320744-30320830)
chr1 (262-337)||(30340910-30340985)
chr1 (269-323)||(23057567-23057621)
chr1 (269-323)||(23061868-23061922)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 37559644 - 37559321
Alignment:
Q  18 aaagttaacataaaagatattttctttaaatttactactatgtcttcaataaacttagatttagtattattaacttggatcaaaagattggtttatgtat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37559644 aaagttaacataaaagatattttctttaaatttactactatgtcttcaataaacttagatttagtattattaacttcgatcaaaagattggtttatgtat 37559545  T
Q  118 tttaaagagcaattgcaaggtttgtatttgatgagtaaaggaaggaacaggtagaaagattcgtacctgaagcatat-ctacattttcagtcttgcatat 216  Q
    |||||||||||||||||||||||||||||||||||  ||||||  |||||  ||||||||||||||||||||||||| || |||||||||||  ||||||    
T  37559544 tttaaagagcaattgcaaggtttgtatttgatgagctaaggaa-aaacagacagaaagattcgtacctgaagcatatcctgcattttcagtc--gcatat 37559448  T
Q  217 tatttagaatgcgatatgtaaattaaagggtgattgaaattaa-caatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggg 315  Q
    |||||||| ||| ||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37559447 tatttagagtgcaatatgtaaaataaagggtgattgaaatcaataaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggg 37559348  T
Q  316 gatcgataccccgcatctccataattt 342  Q
    |||||||||||||||||||||||||||    
T  37559347 gatcgataccccgcatctccataattt 37559321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 8884443 - 8884522
Alignment:
Q  258 aacaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8884443 aacaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 8884522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 36772472 - 36772393
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 36772393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 36793586 - 36793507
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataatt 36793507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 34643078 - 34643003
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34643078 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 34643003  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 3197568 - 3197642
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| | ||| ||||||||||||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 24359791 - 24359865
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  24359791 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 39082468 - 39082542
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  39082468 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| ||||||||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 37559302 - 37559265
Alignment:
Q  356 gttctttctttctcatgaaattcggatgtggcaacttt 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37559302 gttctttctttctcatgaaattcggatgtggcaacttt 37559265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 2626147 - 2626071
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626147 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 456
Target Start/End: Original strand, 40152935 - 40152967
Alignment:
Q  424 taaaaacttatttatttgtataaattgttttag 456  Q
    ||||||||||||||||| |||||||||||||||    
T  40152935 taaaaacttatttatttatataaattgttttag 40152967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 24864607 - 24864682
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24864607 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 7895228 - 7895152
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  7895228 aatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 7895152  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 44415934 - 44416008
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 44416008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 40866373 - 40866298
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  40866373 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 40866298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 9963358 - 9963280
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 342  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccataattt 9963280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 42014306 - 42014380
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| ||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 42014380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 30034301 - 30034376
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 30034376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 46075226 - 46075151
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46075226 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 46075151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 25287960 - 25288034
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25287960 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 34984502 - 34984430
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34984502 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 37022269 - 37022191
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataat 340  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37022269 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccataat 37022191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 46972211 - 46972138
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||| |||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccat 46972138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 27881396 - 27881428
Alignment:
Q  422 cttaaaaacttatttatttgtataaattgtttt 454  Q
    |||||||||||||||||||||||||||| ||||    
T  27881396 cttaaaaacttatttatttgtataaattatttt 27881428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 7432494 - 7432419
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 7432419  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 7442011 - 7441936
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccat 7441936  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 7433055 - 7432981
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 338  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccata 7432981  T

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Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 7425700 - 7425624
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  7425700 aatggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccat 7425624  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 3992882 - 3992806
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  3992882 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 3992806  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 7414660 - 7414596
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgatacc 325  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||    
T  7414660 aatggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgatacc 7414596  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 7418609 - 7418533
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  7418609 aatggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccat 7418533  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 7420583 - 7420519
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccc 326  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  7420583 atggagatgtggatcagatggtagagtgctcgcttagcatgcgagaggtatgcggatcgataccc 7420519  T

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Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 4690208 - 4690133
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccata 4690133  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 262 - 337
Target Start/End: Original strand, 31553694 - 31553769
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 31553769  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 33871116 - 33871041
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33871116 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 6067668 - 6067744
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||    
T  6067668 aatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccat 6067744  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 50968320 - 50968245
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  50968320 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 50968245  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||| ||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  263 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 6071144 - 6071225
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattta 343  Q
    ||||||||||||||||| ||||||||||||| |||| |||||| |||||| | ||| | ||| ||||||||||||| ||||||    
T  6071144 aatggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctccaaaattta 6071225  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 11580202 - 11580277
Alignment:
Q  261 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11580202 aatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 35679467 - 35679544
Alignment:
Q  259 acaatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35679467 acaaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 35692217 - 35692291
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatagggattgataccctgcatctcca 35692291  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 41552100 - 41552174
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  41552100 atggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

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Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 37369586 - 37369512
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37369586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 23058125 - 23058047
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 342  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  23058125 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattattt 23058047  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 23057753 - 23057675
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 342  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||| ||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccattattt 23057675  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 23057938 - 23057860
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 342  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccattattt 23057860  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 23062054 - 23061976
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccataattt 342  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||| ||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccattattt 23061976  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 43065996 - 43066078
Alignment:
Q  264 ggggatgtagctcagatggtagagcgctcgc-----ttagcatgcgagaggtacggggatcgataccccgcatctccataatt 341  Q
    |||||||||||||| ||||||||||||||||     |||||||||||||||||||||| ||||||||||||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccataatt 43066078  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 30320830 - 30320744
Alignment:
Q  253 aaattaacaa--tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    ||||||||||  ||||||||||||||| |||||||||||| ||||| ||||||| ||||||| ||| ||||||||| ||||||||||    
T  30320830 aaattaacaacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccat 30320744  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 30340985 - 30340910
Alignment:
Q  262 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 337  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||| ||| ||||||||||    
T  30340985 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccat 30340910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 23057621 - 23057567
Alignment:
Q  269 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 323  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23057567  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 23061922 - 23061868
Alignment:
Q  269 tgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgata 323  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgata 23061868  T

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